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Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task
Jun’ichi Tsujii

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Overview of BioNLP’09 Shared Task on Event Extraction
Jin-Dong Kim | Tomoko Ohta | Sampo Pyysalo | Yoshinobu Kano | Jun’ichi Tsujii

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Extracting Complex Biological Events with Rich Graph-Based Feature Sets
Jari Björne | Juho Heimonen | Filip Ginter | Antti Airola | Tapio Pahikkala | Tapio Salakoski

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Event Extraction from Trimmed Dependency Graphs
Ekaterina Buyko | Erik Faessler | Joachim Wermter | Udo Hahn

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UZurich in the BioNLP 2009 Shared Task
Kaarel Kaljurand | Gerold Schneider | Fabio Rinaldi

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Biomedical Event Extraction without Training Data
Andreas Vlachos | Paula Buttery | Diarmuid Ó Séaghdha | Ted Briscoe

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A Markov Logic Approach to Bio-Molecular Event Extraction
Sebastian Riedel | Hong-Woo Chun | Toshihisa Takagi | Jun’ichi Tsujii

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High-precision biological event extraction with a concept recognizer
K. Bretonnel Cohen | Karin Verspoor | Helen Johnson | Chris Roeder | Philip Ogren | William Baumgartner | Elizabeth White | Lawrence Hunter

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A memory-based learning approach to event extraction in biomedical texts
Roser Morante | Vincent Van Asch | Walter Daelemans

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Extraction of biomedical events using case-based reasoning
Mariana Neves | José-María Carazo | Alberto Pascual-Montano

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Biomedical Event Annotation with CRFs and Precision Grammars
Andrew MacKinlay | David Martinez | Timothy Baldwin

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Molecular event extraction from Link Grammar parse trees
Jörg Hakenberg | Illés Solt | Domonkos Tikk | Luis Tari | Astrid Rheinländer | Nguyen Quang Long | Graciela Gonzalez | Ulf Leser

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Tunable Domain-Independent Event Extraction in the MIRA Framework
Georgi Georgiev | Kuzman Ganchev | Vassil Momchev | Deyan Peychev | Preslav Nakov | Angus Roberts

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BioEve: Bio-Molecular Event Extraction from Text Using Semantic Classification and Dependency Parsing
Syed Toufeeq Ahmed | Radhika Nair | Chintan Patel | Hasan Davulcu

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From Protein-Protein Interaction to Molecular Event Extraction
Rune Sætre | Makoto Miwa | Kazuhiro Yoshida | Jun’ichi Tsujii

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A Multi-Phase Approach to Biomedical Event Extraction
Hyoung-Gyu Lee | Han-Cheol Cho | Min-Jeong Kim | Joo-Young Lee | Gumwon Hong | Hae-Chang Rim

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Supervised Classification for Extracting Biomedical Events
Arzucan Özgür | Dragomir Radev

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Biomedical Event Detection using Rules, Conditional Random Fields and Parse Tree Distances
Farzaneh Sarafraz | James Eales | Reza Mohammadi | Jonathan Dickerson | David Robertson | Goran Nenadic

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Syntactic Dependency Based Heuristics for Biological Event Extraction
Halil Kilicoglu | Sabine Bergler

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Analyzing text in search of bio-molecular events: a high-precision machine learning framework
Sofie Van Landeghem | Yvan Saeys | Bernard De Baets | Yves Van de Peer

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Exploring ways beyond the simple supervised learning approach for biological event extraction
György Móra | Richárd Farkas | György Szarvas | Zsolt Molnár