{"id":"https://openalex.org/W2617632132","doi":"https://doi.org/10.1089/cmb.2017.0057","title":"RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants","display_name":"RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants","publication_year":2017,"publication_date":"2017-05-25","ids":{"openalex":"https://openalex.org/W2617632132","doi":"https://doi.org/10.1089/cmb.2017.0057","mag":"2617632132","pmid":"https://pubmed.ncbi.nlm.nih.gov/28541743"},"language":"en","primary_location":{"id":"doi:10.1089/cmb.2017.0057","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2017.0057","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043706524","display_name":"Yangyang Hao","orcid":"https://orcid.org/0009-0009-4374-1566"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yangyang Hao","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana","Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001820351","display_name":"Xiaoling Xuei","orcid":"https://orcid.org/0000-0002-4143-2024"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoling Xuei","raw_affiliation_strings":["Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, Indiana","Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100383618","display_name":"Lang Li","orcid":"https://orcid.org/0000-0002-5334-8719"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lang Li","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana","Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077837457","display_name":"Harikrishna Nakshatri","orcid":"https://orcid.org/0000-0001-8876-0052"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harikrishna Nakshatri","raw_affiliation_strings":["Department of Surgery, Indiana University School of Medicine, Indianapolis, Indiana","IU Simon Cancer Center, Indiana University School of Medicine, Indianapolis, Indiana"],"affiliations":[{"raw_affiliation_string":"Department of Surgery, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"IU Simon Cancer Center, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044635265","display_name":"Howard J. Edenberg","orcid":"https://orcid.org/0000-0003-0344-9690"},"institutions":[{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Howard J. Edenberg","raw_affiliation_strings":["Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, Indiana","Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana","Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana"],"affiliations":[{"raw_affiliation_string":"Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100337355","display_name":"Yunlong Liu","orcid":"https://orcid.org/0000-0002-2699-626X"},"institutions":[{"id":"https://openalex.org/I1283055418","display_name":"Indiana University Health","ror":"https://ror.org/01aaptx40","country_code":"US","type":"funder","lineage":["https://openalex.org/I1283055418","https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yunlong Liu","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana","Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, Indiana","Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana","IU Simon Cancer Center, Indiana University School of Medicine, Indianapolis, Indiana"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Center for Medical Genomics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I4394709130"]},{"raw_affiliation_string":"IU Simon Cancer Center, Indiana University School of Medicine, Indianapolis, Indiana","institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I55769427","https://openalex.org/I4394709130"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5043706524","https://openalex.org/A5100337355"],"corresponding_institution_ids":["https://openalex.org/I1283055418","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":null,"apc_paid":null,"fwci":0.2672,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.54010643,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":"7","first_page":"637","last_page":"646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.6134893894195557},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5966227054595947},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5548485517501831},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5020263195037842},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49264007806777954},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.4632016718387604},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.4525827169418335},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.44810596108436584},{"id":"https://openalex.org/keywords/allele-frequency","display_name":"Allele frequency","score":0.42993393540382385},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31257447600364685},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27786263823509216},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2533140778541565},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.25018930435180664},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.15992093086242676},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0972108542919159},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07792246341705322}],"concepts":[{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.6134893894195557},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5966227054595947},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5548485517501831},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5020263195037842},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49264007806777954},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.4632016718387604},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.4525827169418335},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.44810596108436584},{"id":"https://openalex.org/C37463918","wikidata":"https://www.wikidata.org/wiki/Q387981","display_name":"Allele frequency","level":4,"score":0.42993393540382385},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31257447600364685},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27786263823509216},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2533140778541565},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.25018930435180664},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.15992093086242676},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0972108542919159},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07792246341705322},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014408","descriptor_name":"Biomarkers, Tumor","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1089/cmb.2017.0057","is_oa":false,"landing_page_url":"https://doi.org/10.1089/cmb.2017.0057","pdf_url":null,"source":{"id":"https://openalex.org/S78571599","display_name":"Journal of Computational Biology","issn_l":"1066-5277","issn":["1066-5277","1557-8666"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320443","host_organization_name":"Mary Ann Liebert, Inc.","host_organization_lineage":["https://openalex.org/P4310320443"],"host_organization_lineage_names":["Mary Ann Liebert, Inc."],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Computational Biology","raw_type":"journal-article"},{"id":"pmid:28541743","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28541743","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of computational biology : a journal of computational molecular cell biology","raw_type":null},{"id":"pmh:oai:europepmc.org:4974535","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5510701","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/19249","is_oa":false,"landing_page_url":"https://hdl.handle.net/1805/19249","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:scholarworks.iupui.edu:1805/19249","is_oa":false,"landing_page_url":"http://hdl.handle.net/1805/19249","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1964807436","https://openalex.org/W1971584645","https://openalex.org/W2015438948","https://openalex.org/W2042202252","https://openalex.org/W2080660780","https://openalex.org/W2087008771","https://openalex.org/W2089135124","https://openalex.org/W2093144236","https://openalex.org/W2096791516","https://openalex.org/W2102626211","https://openalex.org/W2109991075","https://openalex.org/W2118526609","https://openalex.org/W2120869188","https://openalex.org/W2124465358","https://openalex.org/W2138601221","https://openalex.org/W2146290346","https://openalex.org/W2155943701","https://openalex.org/W2157783208","https://openalex.org/W2168133698","https://openalex.org/W2170490448","https://openalex.org/W2171237493","https://openalex.org/W2518434380","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W1969673184","https://openalex.org/W3132115146","https://openalex.org/W2619166255","https://openalex.org/W2472738690","https://openalex.org/W1539994441","https://openalex.org/W3011303654","https://openalex.org/W2074464258","https://openalex.org/W2359210733","https://openalex.org/W1970342753","https://openalex.org/W3089600567"],"abstract_inverted_index":{"Accurate":[0],"identification":[1],"of":[2],"low-frequency":[3,81],"somatic":[4],"point":[5],"mutations":[6,52],"in":[7,115],"tumor":[8,25,67],"samples":[9],"has":[10],"important":[11],"clinical":[12],"utilities.":[13],"Although":[14],"high-throughput":[15,85],"sequencing":[16,23,86,146],"technology":[17],"enables":[18],"capturing":[19],"such":[20],"variants":[21,83,110],"while":[22],"primary":[24],"samples,":[26],"our":[27,59,116,132],"ability":[28,60],"for":[29],"accurate":[30],"detection":[31],"is":[32,38],"compromised":[33],"when":[34],"the":[35,41,63,150],"variant":[36,130],"frequency":[37],"close":[39],"to":[40,61,78,108],"sequencer":[42],"error":[43,125],"rate.":[44],"Most":[45],"current":[46],"experimental":[47,72,90,151],"and":[48,66,73,145],"bioinformatic":[49],"strategies":[50],"target":[51,109],"with":[53],"\u22655%":[54],"allele":[55],"frequency,":[56],"which":[57],"limits":[58],"understand":[62],"cancer":[64],"etiology":[65],"evolution.":[68],"We":[69],"present":[70],"an":[71],"computational":[74],"modeling":[75],"framework,":[76],"RareVar,":[77],"reliably":[79],"identify":[80],"single-nucleotide":[82],"from":[84,101],"data":[87],"under":[88],"standard":[89],"protocols.":[91],"RareVar":[92],"protocol":[93],"includes":[94],"a":[95,120],"benchmark":[96],"design":[97],"by":[98,128],"pooling":[99],"DNAs":[100],"already":[102],"sequenced":[103],"individuals":[104],"at":[105,111],"various":[106],"concentrations":[107],"desired":[112],"frequencies,":[113],"0.5%-3%":[114],"case.":[117],"By":[118],"applying":[119],"generalized,":[121],"linear":[122],"model-based,":[123],"position-specific":[124],"model,":[126],"followed":[127],"machine-learning-based":[129],"calibration,":[131],"approach":[133],"outperforms":[134],"existing":[135],"methods.":[136],"Our":[137],"method":[138],"can":[139],"be":[140],"applied":[141],"on":[142],"most":[143],"capture":[144],"platforms":[147],"without":[148],"modifying":[149],"protocol.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-07T14:57:38.498316","created_date":"2025-10-10T00:00:00"}
