Using YOLO v7 to Detect Kidney in Magnetic Resonance Imaging.

Evrim Turkbey Evrim B. Turkbey https://orcid.org/0000-0002-5216-3528

Pouria Yazdian Anari Fiona Obiezu Nathan Lay Fatemeh Dehghani Firouzabadi Aditi Chaurasia Mahshid Golagha Shiva Singh Fatemeh Homayounieh Aryan Zahergivar Stephanie A. Harmon Evrim Turkbey Rabindra Gautam Kevin C. Ma María Merino 0002 Elizabeth C. Jones Mark W. Ball W. Marston Linehan Baris Turkbey Ashkan A. Malayeri Using YOLO v7 to Detect Kidney in Magnetic Resonance Imaging. 2024 abs/2402.05817 CoRR https://doi.org/10.48550/arXiv.2402.05817 db/journals/corr/corr2402.html#abs-2402-05817

Holger R. Roth Ziyue Xu 0001 Carlos Tor-Díez Ramon Sánchez-Jacob Jonathan Zember Jose Molto Wenqi Li 0001 Sheng Xu 0001 Baris Turkbey Evrim Turkbey Dong Yang 0005 Ahmed Harouni Nicola Rieke Shishuai Hu Fabian Isensee Claire Tang Qinji Yu Jan Sölter Tong Zheng Vitali Liauchuk Ziqi Zhou Jan Hendrik Moltz Bruno Oliveira 0002 Yong Xia 0001 Klaus H. Maier-Hein Qikai Li Andreas Husch Luyang Zhang Vassili Kovalev Li Kang Alessa Hering João L. Vilaça Mona Flores Daguang Xu Bradford J. Wood Marius George Linguraru Rapid artificial intelligence solutions in a pandemic - The COVID-19-20 Lung CT Lesion Segmentation Challenge. 102605 2022 82 Medical Image Anal. https://doi.org/10.1016/j.media.2022.102605 db/journals/mia/mia82.html#RothXTSZMLXTTYH22

Pengfei Guo Dong Yang 0005 Ali Hatamizadeh An Xu Ziyue Xu 0001 Wenqi Li 0001 Can Zhao 0001 Daguang Xu Stephanie A. Harmon Evrim Turkbey Baris Turkbey Bradford J. Wood Francesca Patella Elvira Stellato Gianpaolo Carrafiello Vishal M. Patel Holger R. Roth Auto-FedRL: Federated Hyperparameter Optimization for Multi-institutional Medical Image Segmentation. 437-455 2022 ECCV (21) https://doi.org/10.1007/978-3-031-19803-8_26 conf/eccv/2022-21 db/conf/eccv/eccv2022-21.html#GuoYHXXLZXHTTWP22

Pengfei Guo Dong Yang 0005 Ali Hatamizadeh An Xu Ziyue Xu 0001 Wenqi Li 0001 Can Zhao 0001 Daguang Xu Stephanie A. Harmon Evrim Turkbey Baris Turkbey Bradford J. Wood Francesca Patella Elvira Stellato Gianpaolo Carrafiello Vishal M. Patel Holger R. Roth Auto-FedRL: Federated Hyperparameter Optimization for Multi-institutional Medical Image Segmentation. 2022 abs/2203.06338 CoRR https://doi.org/10.48550/arXiv.2203.06338 db/journals/corr/corr2203.html#abs-2203-06338

Dong Yang 0005 Ziyue Xu 0001 Wenqi Li 0001 Andriy Myronenko Holger R. Roth Stephanie A. Harmon Sheng Xu 0001 Baris Turkbey Evrim Turkbey Xiaosong Wang 0001 Wentao Zhu 0001 Gianpaolo Carrafiello Francesca Patella Maurizio Cariati Hirofumi Obinata Hitoshi Mori Kaku Tamura Peng An Bradford J. Wood Daguang Xu Federated semi-supervised learning for COVID region segmentation in chest CT using multi-national data from China, Italy, Japan. 101992 2021 70 Medical Image Anal. https://doi.org/10.1016/j.media.2021.101992 https://www.wikidata.org/entity/Q112727579 db/journals/mia/mia70.html#0005XLMRH0TTWZC21

Ugur Demir Ismail Irmakci Elif Keles Ahmet Topcu Ziyue Xu 0001 Concetto Spampinato Sachin Jambawalikar Evrim Turkbey Baris Turkbey Ulas Bagci Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis. 396-405 2021 MLMI@MICCAI https://doi.org/10.1007/978-3-030-87589-3_41 conf/miccai/2021mlmi db/conf/miccai/mlmi2021.html#DemirIKTXSJTTB21 Riddhish Bhalodia Ali Hatamizadeh Leo K. Tam Ziyue Xu 0001 Xiaosong Wang 0001 Evrim Turkbey Daguang Xu Improving Pneumonia Localization via Cross-Attention on Medical Images and Reports. 571-581 2021 MICCAI (2) https://doi.org/10.1007/978-3-030-87196-3_53 conf/miccai/2021-2 db/conf/miccai/miccai2021-2.html#BhalodiaHTXWTX21

Ugur Demir Ismail Irmakci Elif Keles Ahmet Topcu Ziyue Xu 0001 Concetto Spampinato Sachin Jambawalikar Evrim Turkbey Baris Turkbey Ulas Bagci Information Bottleneck Attribution for Visual Explanations of Diagnosis and Prognosis. 2021 abs/2104.02869 CoRR https://arxiv.org/abs/2104.02869 db/journals/corr/corr2104.html#abs-2104-02869

Yingda Xia Dong Yang 0005 Wenqi Li 0001 Andriy Myronenko Daguang Xu Hirofumi Obinata Hitoshi Mori Peng An Stephanie A. Harmon Evrim Turkbey Baris Turkbey Bradford J. Wood Francesca Patella Elvira Stellato Gianpaolo Carrafiello Anna Ierardi Alan L. Yuille Holger Roth Auto-FedAvg: Learnable Federated Averaging for Multi-Institutional Medical Image Segmentation. 2021 abs/2104.10195 CoRR https://arxiv.org/abs/2104.10195 db/journals/corr/corr2104.html#abs-2104-10195

Riddhish Bhalodia Ali Hatamizadeh Leo K. Tam Ziyue Xu 0001 Xiaosong Wang 0001 Evrim Turkbey Daguang Xu Improving Pneumonia Localization via Cross-Attention on Medical Images and Reports. 2021 abs/2110.03094 CoRR https://arxiv.org/abs/2110.03094 db/journals/corr/corr2110.html#abs-2110-03094

Leo K. Tam Xiaosong Wang 0001 Evrim Turkbey Kevin Lu Yuhong Wen Daguang Xu Weakly Supervised One-Stage Vision and Language Disease Detection Using Large Scale Pneumonia and Pneumothorax Studies. 45-55 2020 MICCAI (4) https://doi.org/10.1007/978-3-030-59719-1_5 conf/miccai/2020-4 db/conf/miccai/miccai2020-4.html#TamWTLWX20

Leo K. Tam Xiaosong Wang 0001 Evrim Turkbey Kevin Lu Yuhong Wen Daguang Xu Weakly supervised one-stage vision and language disease detection using large scale pneumonia and pneumothorax studies. 2020 abs/2007.15778 CoRR https://arxiv.org/abs/2007.15778 db/journals/corr/corr2007.html#abs-2007-15778

Dong Yang 0005 Ziyue Xu 0001 Wenqi Li 0001 Andriy Myronenko Holger R. Roth Stephanie A. Harmon Sheng Xu 0001 Baris Turkbey Evrim Turkbey Xiaosong Wang 0001 Wentao Zhu 0001 Gianpaolo Carrafiello Francesca Patella Maurizio Cariati Hirofumi Obinata Hitoshi Mori Kaku Tamura Peng An Bradford J. Wood Daguang Xu Federated Semi-Supervised Learning for COVID Region Segmentation in Chest CT using Multi-National Data from China, Italy, Japan. 2020 abs/2011.11750 CoRR https://arxiv.org/abs/2011.11750 db/journals/corr/corr2011.html#abs-2011-11750

Amal Farag Le Lu 0001 Holger R. Roth Jiamin Liu Evrim Turkbey Ronald M. Summers A Bottom-Up Approach for Pancreas Segmentation Using Cascaded Superpixels and (Deep) Image Patch Labeling. 386-399 2017 26 IEEE Trans. Image Process. 1 https://doi.org/10.1109/TIP.2016.2624198 https://www.wikidata.org/entity/Q51567884 db/journals/tip/tip26.html#FaragLRLTS17

Amal Farag Le Lu 0001 Holger R. Roth Jiamin Liu Evrim Turkbey Ronald M. Summers Automatic Pancreas Segmentation Using Coarse-to-Fine Superpixel Labeling. 279-302 2017 Deep Learning and Convolutional Neural Networks for Medical Image Computing https://doi.org/10.1007/978-3-319-42999-1_16 series/acvpr/978-3-319-42998-4 db/series/acvpr/learning2017.html#FaragLRLTS17 Jiamin Liu David Wang Zhuoshi Wei Le Lu 0001 Lauren Kim Evrim Turkbey Ronald M. Summers Colitis detection on computed tomography using regional convolutional neural networks. 863-866 2016 ISBI https://doi.org/10.1109/ISBI.2016.7493402 conf/isbi/2016 db/conf/isbi/isbi2016.html#LiuWWLKTS16 Jiamin Liu Nathan Lay Zhuoshi Wei Le Lu 0001 Lauren Kim Evrim Turkbey Ronald M. Summers Colitis detection on abdominal CT scans by rich feature hierarchies. 97851N 2016 Computer-Aided Diagnosis https://doi.org/10.1117/12.2217681 conf/micad/2016 db/conf/micad/micad2016.html#LiuLWLKTS16 Jiamin Liu Divya Narayanan Kevin W. Chang Lauren Kim Evrim Turkbey Le Lu 0001 Jianhua Yao 0001 Ronald M. Summers Automated segmentation of the thyroid gland on CT using multi-atlas label fusion and random forest. 1114-1117 2015 ISBI https://doi.org/10.1109/ISBI.2015.7164067 conf/isbi/2015 db/conf/isbi/isbi2015.html#LiuNCKTLYS15 Joanne Hoffman Jiamin Liu Evrim Turkbey Lauren Kim Ronald M. Summers Automatic identification of IASLC-defined mediastinal lymph node stations on CT scans using multi-atlas organ segmentation. 94141R 2015 Computer-Aided Diagnosis https://doi.org/10.1117/12.2082190 conf/micad/2015 db/conf/micad/micad2015.html#HoffmanLTKS15 Jiamin Liu Kevin W. Chang Lauren Kim Evrim Turkbey Le Lu 0001 Jianhua Yao 0001 Ronald M. Summers Automated segmentation of thyroid gland on CT images with multi-atlas label fusion and random classification forest. 941413 2015 Computer-Aided Diagnosis https://doi.org/10.1117/12.2082204 conf/micad/2015 db/conf/micad/micad2015.html#LiuCKTLYS15 Holger R. Roth Le Lu 0001 Amal Farag Hoo-Chang Shin Jiamin Liu Evrim B. Turkbey Ronald M. Summers DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation. 556-564 2015 MICCAI (1) https://doi.org/10.1007/978-3-319-24553-9_68 conf/miccai/2015-1 db/conf/miccai/miccai2015-1.html#RothLFSLTS15 Holger R. Roth Amal Farag Le Lu 0001 Evrim B. Turkbey Ronald M. Summers Deep convolutional networks for pancreas segmentation in CT imaging. 94131G 2015 Image Processing https://doi.org/10.1117/12.2081420 conf/miip/2015 db/conf/miip/miip2015.html#RothFLTS15

Holger Roth Amal Farag Le Lu 0001 Evrim B. Turkbey Ronald M. Summers Deep convolutional networks for pancreas segmentation in CT imaging. 2015 abs/1504.03967 CoRR http://arxiv.org/abs/1504.03967 db/journals/corr/corr1504.html#RothFLTS15

Amal Farag Le Lu 0001 Holger R. Roth Jiamin Liu Evrim Turkbey Ronald M. Summers A Bottom-up Approach for Pancreas Segmentation using Cascaded Superpixels and (Deep) Image Patch Labeling. 2015 abs/1505.06236 CoRR http://arxiv.org/abs/1505.06236 db/journals/corr/corr1505.html#FaragLRLTS15

Holger R. Roth Le Lu 0001 Amal Farag Hoo-Chang Shin Jiamin Liu Evrim Turkbey Ronald M. Summers DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation. 2015 abs/1506.06448 CoRR http://arxiv.org/abs/1506.06448 db/journals/corr/corr1506.html#RothLFSLTS15

Jiamin Liu Sanket Pattanaik Jianhua Yao 0001 Evrim Turkbey Weidong Zhang 0001 Xiao Zhang Ronald M. Summers Computer aided detection of epidural masses on computed tomography scans. 606-612 2014 38 Comput. Medical Imaging Graph. 7 https://doi.org/10.1016/j.compmedimag.2014.04.007 https://www.wikidata.org/entity/Q33918059 db/journals/cmig/cmig38.html#LiuPYTZZS14

Jiamin Liu Jocelyn Zhao Joanne Hoffman Jianhua Yao 0001 Le Lu 0001 Evrim Turkbey Christine Kim Ronald M. Summers Detection and station mapping of mediastinal lymph nodes on thoracic computed tomography using spatial prior from multi-atlas label fusion. 1107-1110 2014 ISBI https://doi.org/10.1109/ISBI.2014.6868068 conf/isbi/2014 db/conf/isbi/isbi2014.html#LiuZHYLTKS14 Jiamin Liu Jocelyn Zhao Joanne Hoffman Jianhua Yao 0001 Weidong Zhang 0001 Evrim B. Turkbey Shijun Wang Christine Kim Ronald M. Summers Mediastinal lymph node detection on thoracic CT scans using spatial prior from multi-atlas label fusion. 90350M 2014 Computer-Aided Diagnosis https://doi.org/10.1117/12.2043737 conf/micad/2014 db/conf/micad/micad2014.html#LiuZHY0TWKS14 Kevin M. Cherry Shijun Wang Evrim B. Turkbey Ronald M. Summers Abdominal lymphadenopathy detection using random forest. 90351G 2014 Computer-Aided Diagnosis https://doi.org/10.1117/12.2043837 conf/micad/2014 db/conf/micad/micad2014.html#CherryWTS14 Le Lu 0001 Jianhua Yao 0001 Evrim Turkbey Ronald M. Summers Multilevel image recognition using discriminative patches and kernel covariance descriptor. 903528 2014 Computer-Aided Diagnosis https://doi.org/10.1117/12.2043692 conf/micad/2014 db/conf/micad/micad2014.html#LuYTS14 Amal Farag Le Lu 0001 Evrim Turkbey Jiamin Liu Ronald M. Summers A Bottom-Up Approach for Automatic Pancreas Segmentation in Abdominal CT Scans. 103-113 2014 ABDI@MICCAI https://doi.org/10.1007/978-3-319-13692-9_10 conf/miccai/2014abdi db/conf/miccai/abdi2014.html#FaragLTLS14 Holger R. Roth Le Lu 0001 Ari Seff Kevin M. Cherry Joanne Hoffman Shijun Wang Jiamin Liu Evrim Turkbey Ronald M. Summers A New 2.5D Representation for Lymph Node Detection Using Random Sets of Deep Convolutional Neural Network Observations. 520-527 2014 MICCAI (1) https://doi.org/10.1007/978-3-319-10404-1_65 https://www.wikidata.org/entity/Q85836030 conf/miccai/2014-1 db/conf/miccai/miccai2014-1.html#RothLSCHWLTS14 Ari Seff Le Lu 0001 Kevin M. Cherry Holger R. Roth Jiamin Liu Shijun Wang Joanne Hoffman Evrim B. Turkbey Ronald M. Summers 2D View Aggregation for Lymph Node Detection Using a Shallow Hierarchy of Linear Classifiers. 544-552 2014 MICCAI (1) https://doi.org/10.1007/978-3-319-10404-1_68 https://www.wikidata.org/entity/Q62497608 conf/miccai/2014-1 db/conf/miccai/miccai2014-1.html#SeffLCRLWHTS14 David Allen Le Lu 0001 Jianhua Yao 0001 Jiamin Liu Evrim Turkbey Ronald M. Summers Robust automated lymph node segmentation with random forests. 90343X 2014 Image Processing https://doi.org/10.1117/12.2043926 conf/miip/2014 db/conf/miip/miip2014.html#AllenLYLTS14

Holger R. Roth Le Lu 0001 Ari Seff Kevin M. Cherry Joanne Hoffman Shijun Wang Jiamin Liu Evrim Turkbey Ronald M. Summers A New 2.5D Representation for Lymph Node Detection using Random Sets of Deep Convolutional Neural Network Observations. 2014 abs/1406.2639 CoRR http://arxiv.org/abs/1406.2639 db/journals/corr/corr1406.html#RothLSCHWLTS14

Amal Farag Le Lu 0001 Evrim Turkbey Jiamin Liu Ronald M. Summers A Bottom-Up Approach for Automatic Pancreas Segmentation in Abdominal CT Scans. 2014 abs/1407.8497 CoRR http://arxiv.org/abs/1407.8497 db/journals/corr/corr1407.html#FaragLTLS14

Ari Seff Le Lu 0001 Kevin M. Cherry Holger Roth Jiamin Liu Shijun Wang Joanne Hoffman Evrim B. Turkbey Ronald M. Summers 2D View Aggregation for Lymph Node Detection Using a Shallow Hierarchy of Linear Classifiers. 2014 abs/1408.3337 CoRR http://arxiv.org/abs/1408.3337 db/journals/corr/corr1408.html#SeffLCRLWHTS14

Ulas Bagci Jianhua Yao 0001 Jesus Caban Evrim Turkbey Omer Aras Daniel J. Mollura A graph-theoretic approach for segmentation of PET images. 8479-8482 2011 EMBC https://doi.org/10.1109/IEMBS.2011.6092092 https://www.wikidata.org/entity/Q36332031 conf/embc/2011 db/conf/embc/embc2011.html#BagciYCTAM11 David Allen Peng An Pouria Yazdian Anari Omer Aras Ulas Bagci Mark W. Ball Riddhish Bhalodia Jesus J. CabanJesus Caban Maurizio Cariati Gianpaolo Carrafiello Kevin W. Chang Aditi Chaurasia Kevin M. Cherry Ugur Demir Amal Farag Fatemeh Dehghani Firouzabadi Mona Flores Rabindra Gautam Mahshid Golagha Pengfei Guo Stephanie A. Harmon Ahmed Harouni Ali Hatamizadeh Alessa Hering Joanne Hoffman Fatemeh Homayounieh Shishuai Hu Andreas Husch Anna Ierardi Ismail Irmakci Fabian Isensee Sachin Jambawalikar Elizabeth C. Jones Li Kang Elif Keles Christine Kim Lauren Kim Vassili Kovalev Nathan Lay Qikai Li Wenqi Li 0001 Vitali Liauchuk W. Marston Linehan Marius George Linguraru Jiamin Liu Kevin Lu Le Lu 0001 Kevin C. Ma Klaus H. Maier-Hein Ashkan A. Malayeri María Merino 0002 Daniel J. Mollura Jose Molto Jan Hendrik Moltz Hitoshi Mori Andriy Myronenko Divya Narayanan Fiona Obiezu Hirofumi Obinata Bruno Oliveira 0002 Vishal M. Patel Francesca Patella Sanket Pattanaik Nicola Rieke Holger RothHolger R. Roth Ramon Sánchez-Jacob Ari Seff Hoo-Chang Shin Shiva Singh Jan Sölter Concetto Spampinato Elvira Stellato Ronald M. Summers Leo K. Tam Kaku Tamura Claire Tang Ahmet Topcu Carlos Tor-Díez Baris Turkbey João L. Vilaça David Wang Shijun Wang Xiaosong Wang 0001 Zhuoshi Wei Yuhong Wen Bradford J. Wood Yingda Xia Yong Xia 0001 An Xu Daguang Xu Sheng Xu 0001 Ziyue Xu 0001 Dong Yang 0005 Jianhua Yao 0001 Qinji Yu Alan L. Yuille Aryan Zahergivar Jonathan Zember Luyang Zhang Weidong Zhang 0001 Xiao Zhang Can Zhao 0001 Jocelyn Zhao Tong Zheng Ziqi Zhou Wentao Zhu 0001