Separable distributed local thickness algorithm for efficient morphological characterization of terapixel-scale volume images.

Marco Stampanoni https://orcid.org/0000-0001-7486-6681 https://www.wikidata.org/entity/Q88852202 https://d-nb.info/gnd/1146422105

Arttu Miettinen Elena Borisova Marco Stampanoni Goran Lovric Separable distributed local thickness algorithm for efficient morphological characterization of terapixel-scale volume images. 104443 2025 260 Comput. Vis. Image Underst. https://doi.org/10.1016/j.cviu.2025.104443 db/journals/cviu/cviu260.html#MiettinenBSL25 streams/journals/cviu

Qianwei Qu Christian M. Schlepütz Marco Stampanoni Analytical Reconstruction of Periodically Deformed Objects in Time-resolved CT. 2025 June abs/2506.03792 CoRR https://doi.org/10.48550/arXiv.2506.03792 db/journals/corr/corr2506.html#abs-2506-03792 streams/journals/corr

Stefano van Gogh Subhadip Mukherjee Michal Rawlik Alexandre Pereira Simon Spindler Marie-Christine Zdora Martin Stauber Zsuzsanna Varga Marco Stampanoni Data-Driven Gradient Regularization for Quasi-Newton Optimization in Iterative Grating Interferometry CT Reconstruction. 1033-1044 2024 March 43 IEEE Trans. Medical Imaging 3 https://doi.org/10.1109/TMI.2023.3325442 db/journals/tmi/tmi43.html#GoghMRPSZSVS24

Benjamin K. Blykers Caori Organista Matias Kagias Federica Marone Marco Stampanoni Matthieu N. Boone Veerle Cnudde Jan Aelterman Exploration of the X-ray Dark-Field Signal in Mineral Building Materials. 282 2022 8 J. Imaging 10 https://doi.org/10.3390/jimaging8100282 db/journals/jimaging/jimaging8.html#BlykersOKMSBCA22

Alessandra Patera Antonio G. Zippo Anne Bonnin Marco Stampanoni Gabriele E. M. Biella Brain micro-vasculature imaging: An unsupervised deep learning algorithm for segmenting mouse brain volume probed by high-resolution phase-contrast X-ray tomography. 1211-1220 2021 31 Int. J. Imaging Syst. Technol. 3 https://doi.org/10.1002/ima.22520 db/journals/imst/imst31.html#PateraZBSB21

Arttu Miettinen Ioannis Vogiatzis Oikonomidis Anne Bonnin Marco Stampanoni NRStitcher: non-rigid stitching of terapixel-scale volumetric images. 5290-5297 2019 35 Bioinform. 24 https://doi.org/10.1093/bioinformatics/btz423 https://www.wikidata.org/entity/Q92213970 db/journals/bioinformatics/bioinformatics35.html#MiettinenOBS19

Stephan J. Ihle Andreas Michael Reichmuth Sophie Girardin Hana Han Flurin Stauffer Anne Bonnin Marco Stampanoni Karthik Pattisapu János Vörös Csaba Forró Unsupervised data to content transformation with histogram-matching cycle-consistent generative adversarial networks. 461-470 2019 1 Nat. Mach. Intell. 10 https://doi.org/10.1038/s42256-019-0096-2 db/journals/natmi/natmi1.html#IhleRGHSBSPVF19

Hector Dejea Christine Tanner Radhakrishna Achanta Marco Stampanoni Fernando Pérez-Cruz Ender Konukoglu Anne Bonnin Synchrotron X-Ray Phase Contrast Imaging and Deep Neural Networks for Cardiac Collagen Quantification in Hypertensive Rat Model. 187-195 2019 FIMH https://doi.org/10.1007/978-3-030-21949-9_21 conf/fimh/2019 db/conf/fimh/fimh2019.html#DejeaTASPKB19

Filippo Arcadu Jakob Vogel Marco Stampanoni Federica Marone Improving Analytical Tomographic Reconstructions Through Consistency Conditions. 341-361 2017 155 Fundam. Informaticae 4 https://doi.org/10.3233/FI-2017-1589 db/journals/fuin/fuin155.html#ArcaduVSM17

Hector Dejea Patricia Garcia-Cañadilla Marco Stampanoni Monica Zamora Fátima Crispi Bart H. Bijnens Anne Bonnin Microstructural Analysis of Cardiac Endomyocardial Biopsies with Synchrotron Radiation-Based X-Ray Phase Contrast Imaging. 23-31 2017 FIMH https://doi.org/10.1007/978-3-319-59448-4_3 https://www.wikidata.org/entity/Q58862278 conf/fimh/2017 db/conf/fimh/fimh2017.html#DejeaGSZCBB17

Filippo Arcadu Masih Nilchian Alain Studer Marco Stampanoni Federica Marone A Forward Regridding Method With Minimal Oversampling for Accurate and Efficient Iterative Tomographic Algorithms. 1207-1218 2016 25 IEEE Trans. Image Process. 3 https://doi.org/10.1109/TIP.2016.2516945 https://www.wikidata.org/entity/Q40072617 db/journals/tip/tip25.html#ArcaduNSSM16

Filippo Arcadu Jakob Vogel Marco Stampanoni Federica Marone Improving analytical tomographic reconstructions through consistency conditions. 2016 abs/1609.06604 CoRR http://arxiv.org/abs/1609.06604 db/journals/corr/corr1609.html#ArcaduVSM16

Filippo Arcadu Marco Stampanoni Federica Marone On the crucial impact of the coupling projector-backprojector in iterative tomographic reconstruction. 2016 abs/1612.05515 CoRR http://arxiv.org/abs/1612.05515 db/journals/corr/corr1612.html#ArcaduSM16

Kevin Mader Leah-Rae Donahue Ralph Müller Marco Stampanoni High-throughput, Scalable, Quantitative, Cellular Phenotyping using X-Ray Tomographic Microscopy. 1483-1498 2014 IWBBIO http://iwbbio.ugr.es/2014/papers/IWBBIO_2014_paper_158.pdf conf/iwbbio/2014 db/conf/iwbbio/iwbbio2014.html#MaderDMS14 Masih Nilchian Cédric Vonesch Peter Modregger Marco Stampanoni Michael Unser Iterative FBP for improved reconstruction of X-ray differential phase-contrast tomograms. 1260-1263 2013 conf/isbi/2013 ISBI https://doi.org/10.1109/ISBI.2013.6556760 db/conf/isbi/isbi2013.html#NilchianVMSU13

Bernd R. Pinzer M. Cacquevel Peter Modregger S. A. McDonald J. C. Bensadoun T. Thuering P. Aebischer Marco Stampanoni Imaging brain amyloid deposition using grating-based differential phase contrast tomography. 1336-1346 2012 61 NeuroImage 4 https://doi.org/10.1016/j.neuroimage.2012.03.029 https://www.wikidata.org/entity/Q39636306 db/journals/neuroimage/neuroimage61.html#PinzerCMMBTAS12

Stefan Heinzer Gisela Kuhn Thomas Krucker Eric P. Meyer Alexandra Ulmann-Schuler Marco Stampanoni Max Gassmann Hugo H. Marti Ralph Müller Johannes Vogel Novel three-dimensional analysis tool for vascular trees indicates complete micro-networks, not single capillaries, as the angiogenic endpoint in mice overexpressing human VEGF<sub>165</sub> in the brain. 1549-1558 2008 39 NeuroImage 4 https://doi.org/10.1016/j.neuroimage.2007.10.054 https://www.wikidata.org/entity/Q48027992 db/journals/neuroimage/neuroimage39.html#HeinzerKKMUSGMM08

Stefan Heinzer Thomas Krucker Marco Stampanoni Rafael Abela Eric P. Meyer Alexandra Schuler Philipp Schneider Ralph Müller Hierarchical microimaging for multiscale analysis of large vascular networks. 626-636 2006 32 NeuroImage 2 https://doi.org/10.1016/j.neuroimage.2006.03.043 https://www.wikidata.org/entity/Q48541529 db/journals/neuroimage/neuroimage32.html#HeinzerKSAMSSM06

Stefan Heinzer Thomas Krucker Eric P. Meyer Alexandra Schuler Marco Stampanoni Rafael Abela Ralph Müller Hierarchical Assessment of Vascular Alterations in a Mouse Model for Alzheimer's Disease. 149-152 2006 conf/isbi/2006 ISBI https://doi.org/10.1109/ISBI.2006.1624874 db/conf/isbi/isbi2006.html#HeinzerKMSSAM06 Marco Stampanoni Amela Groso Franz Pfeiffer Oliver Bunk Timm Weitkamp Ana Diaz Christian David Phase contrast imaging: a new tool for biomedical investigations. 1100-1103 2006 conf/isbi/2006 ISBI https://doi.org/10.1109/ISBI.2006.1625114 db/conf/isbi/isbi2006.html#StampanoniGPBWDD06 Rafael Abela Radhakrishna Achanta P. Aebischer Jan Aelterman Filippo Arcadu J. C. Bensadoun Gabriele E. M. Biella Bart H. Bijnens Benjamin K. Blykers Anne Bonnin Matthieu N. Boone Elena Borisova Oliver Bunk M. Cacquevel Veerle Cnudde Fátima Crispi Christian David Hector Dejea Ana Diaz Leah-Rae Donahue Csaba Forró Patricia Garcia-Cañadilla Max Gassmann Sophie Girardin Stefano van Gogh Amela Groso Hana Han Stefan Heinzer Stephan J. Ihle Matias Kagias Ender Konukoglu Thomas Krucker Gisela Kuhn Goran Lovric Kevin Mader Federica Marone Hugo H. Marti S. A. McDonald Eric P. Meyer Arttu Miettinen Peter Modregger Subhadip Mukherjee Ralph Müller Masih Nilchian Ioannis Vogiatzis Oikonomidis Caori Organista Alessandra Patera Karthik Pattisapu Alexandre Pereira Fernando Pérez-Cruz Franz Pfeiffer Bernd R. Pinzer Qianwei Qu Michal Rawlik Andreas Michael Reichmuth Christian M. Schlepütz Philipp Schneider Simon Spindler Martin Stauber Flurin Stauffer Alain Studer Christine Tanner T. Thuering Alexandra Ulmann-SchulerAlexandra Schuler Michael Unser Zsuzsanna Varga Jakob Vogel Johannes Vogel Cédric Vonesch János Vörös Timm Weitkamp Monica Zamora Marie-Christine Zdora Antonio Giuliano ZippoAntonio G. Zippo