DAMMER: Direct Adaptive Multi-Resolution MEsh Reconstruction From X-Ray Measurements.

Arnold J. den Dekker Arnold Jan den Dekker Arjan den Dekker University of Antwerp, Department of Physics, Belgium Delft University of Technology, The Netherlands https://visielab.uantwerpen.be/people/arjan-den-dekker https://scholar.google.com/citations?user=VIj6m9MAAAAJ https://orcid.org/0000-0002-0194-0198 https://www.wikidata.org/entity/Q60023373

Jannes Merckx Arnold J. den Dekker Jan Sijbers Jan De Beenhouwer DAMMER: Direct Adaptive Multi-Resolution MEsh Reconstruction From X-Ray Measurements. 926-941 2025 11 IEEE Trans. Computational Imaging https://doi.org/10.1109/TCI.2025.3587408 db/journals/tci/tci11.html#MerckxDSB25 streams/journals/tci

Quinten Beirinckx Piet Bladt Merlijn C. E. van der Plas Matthias J. P. van Osch Ben Jeurissen Arnold J. den Dekker Jan Sijbers Model-based super-resolution reconstruction for pseudo-continuous Arterial Spin Labeling. 120506 2024 February 286 NeuroImage https://doi.org/10.1016/j.neuroimage.2024.120506 db/journals/neuroimage/neuroimage286.html#BeirinckxBPOJDS24

Diana L. Giraldo Quinten Beirinckx Arnold J. den Dekker Ben Jeurissen Jan Sijbers Super-Resolution Reconstruction of Multi-Slice T2-W FLAIR MRI Improves Multiple Sclerosis Lesion Segmentation. 1-4 2023 EMBC https://doi.org/10.1109/EMBC40787.2023.10341047 conf/embc/2023 db/conf/embc/embc2023.html#GiraldoBDJS23 Jens Renders Banafshe Shafieizargar Marleen Verhoye Jan De Beenhouwer Arnold J. den Dekker Jan Sijbers Delta-MRI: Direct Deformation Estimation from Longitudinally Acquired K-Space Data. 1-4 2023 ISBI https://doi.org/10.1109/ISBI53787.2023.10230697 conf/isbi/2023 db/conf/isbi/isbi2023.html#RendersSVBDS23

Quinten Beirinckx Ben Jeurissen Michele Nicastro Dirk H. J. Poot Marleen Verhoye Arnold J. den Dekker Jan Sijbers Model-based super-resolution reconstruction with joint motion estimation for improved quantitative MRI parameter mapping. 102071 2022 100 Comput. Medical Imaging Graph. https://doi.org/10.1016/j.compmedimag.2022.102071 db/journals/cmig/cmig100.html#BeirinckxJNPVDS22

Vincenzo Anania Quinten Collier Jelle Veraart Annemieke E. Buikema Floris Vanhevel Thibo Billiet Ben Jeurissen Arnold J. den Dekker Jan Sijbers Improved diffusion parameter estimation by incorporating T2 relaxation properties into the DKI-FWE model. 119219 2022 256 NeuroImage https://doi.org/10.1016/j.neuroimage.2022.119219 db/journals/neuroimage/neuroimage256.html#AnaniaCVBVBJDS22

Banafshe Shafieizargar Riwaj Byanju Jan Sijbers Stefan Klein 0001 Arnold J. den Dekker Dirk H. J. Poot Systematic review of reconstruction techniques for accelerated quantitative MRI. 2022 December https://doi.org/10.5281/zenodo.7473773 Zenodo streams/repo/zenodo

Emanoel R. Sabidussi Stefan Klein 0001 Matthan W. A. Caan Shabab Bazrafkan Arnold J. den Dekker Jan Sijbers Wiro J. Niessen Dirk H. J. Poot Recurrent inference machines as inverse problem solvers for MR relaxometry. 102220 2021 74 Medical Image Anal. https://doi.org/10.1016/j.media.2021.102220 db/journals/mia/mia74.html#SabidussiKCBDSN21

Banafshe Shafieizargar Ben Jeurissen Dirk H. J. Poot Arnold J. den Dekker Jan Sijbers Multi-contrast multi-shot EPI for accelerated diffusion MRI. 3869-3872 2021 EMBC https://doi.org/10.1109/EMBC46164.2021.9630069 conf/embc/2021 db/conf/embc/embc2021.html#ShafieizargarJP21

Emanoel R. Sabidussi Stefan Klein 0001 Matthan W. A. Caan Shabab Bazrafkan Arnold J. den Dekker Jan Sijbers Wiro J. Niessen Dirk H. J. Poot Recurrent Inference Machines as inverse problem solvers for MR relaxometry. 2021 abs/2106.07379 CoRR https://arxiv.org/abs/2106.07379 db/journals/corr/corr2106.html#abs-2106-07379

Quinten Beirinckx Gabriel Ramos-Llordén Ben Jeurissen Dirk H. J. Poot Paul M. Parizel Marleen Verhoye Jan Sijbers Arnold J. den Dekker Joint Maximum Likelihood Estimation of Motion and T1 Parameters from Magnetic Resonance Images in a Super-resolution Framework: a Simulation Study. 105-128 2020 172 Fundam. Informaticae 2 https://doi.org/10.3233/FI-2020-1896 db/journals/fuin/fuin172.html#BeirinckxRJPPVS20

Gabriel Ramos-Llordén Gonzalo Vegas-Sánchez-Ferrero Marcus Bjork Floris Vanhevel Paul M. Parizel Raúl San José Estépar Arnold J. den Dekker Jan Sijbers NOVIFAST: A Fast Algorithm for Accurate and Precise VFA MRI T1 Mapping. 2414-2427 2018 37 IEEE Trans. Medical Imaging 11 https://doi.org/10.1109/TMI.2018.2833288 https://www.wikidata.org/entity/Q62663761 db/journals/tmi/tmi37.html#Ramos-LlordenVB18

P. V. Sudeep Palanisamy Ponnusamy Chandrasekharan Kesavadas Jan Sijbers Arnold J. den Dekker Jeny Rajan A nonlocal maximum likelihood estimation method for enhancing magnetic resonance phase maps. 913-920 2017 11 Signal Image Video Process. 5 https://doi.org/10.1007/s11760-016-1039-6 https://www.wikidata.org/entity/Q58378335 db/journals/sivp/sivp11.html#SudeepPKSDR17

Gabriel Ramos-Llordén Arnold J. den Dekker Gwendolyn Van Steenkiste Ben Jeurissen Floris Vanhevel Johan Van Audekerke Marleen Verhoye Jan Sijbers A Unified Maximum Likelihood Framework for Simultaneous Motion and T1 Estimation in Quantitative MR T1 Mapping. 433-446 2017 36 IEEE Trans. Medical Imaging 2 https://doi.org/10.1109/TMI.2016.2611653 https://www.wikidata.org/entity/Q39357192 db/journals/tmi/tmi36.html#Ramos-LlordenDS17

Gabriel Ramos-Llordén Arnold J. den Dekker Jan Sijbers Partial Discreteness: A Novel Prior for Magnetic Resonance Image Reconstruction. 1041-1053 2017 36 IEEE Trans. Medical Imaging 5 https://doi.org/10.1109/TMI.2016.2645122 https://www.wikidata.org/entity/Q39062616 db/journals/tmi/tmi36.html#Ramos-LlordenDS17a

Piet Bladt Gwendolyn Van Steenkiste Gabriel Ramos-Llordén Arnold J. den Dekker Jan Sijbers Multi-voxel algorithm for quantitative bi-exponential MRI T1 estimation. 978402 2016 Image Processing https://doi.org/10.1117/12.2216831 https://www.wikidata.org/entity/Q62663802 conf/miip/2016 db/conf/miip/miip2016.html#BladtSRDS16 Gabriel Ramos-Llordén Hilde Segers Willem Jan Palenstijn Arnold J. den Dekker Jan Sijbers Partially discrete magnetic resonance tomography. 1653-1657 2015 ICIP https://doi.org/10.1109/ICIP.2015.7351081 https://www.wikidata.org/entity/Q62663817 conf/icip/2015 db/conf/icip/icip2015.html#Ramos-LlordenSP15 Gabriel Ramos-Llordén Arnold J. den Dekker Gwendolyn Van Steenkiste Johan Van Audekerke Marleen Verhoye Jan Sijbers Simultaneous motion correction and T1 estimation in quantitative T1 mapping: An ML restoration approach. 3160-3164 2015 ICIP https://doi.org/10.1109/ICIP.2015.7351386 https://www.wikidata.org/entity/Q62663821 conf/icip/2015 db/conf/icip/icip2015.html#Ramos-LlordenDS15 Gwendolyn Van Steenkiste Dirk H. J. Poot Ben Jeurissen Arnold J. den Dekker Jan Sijbers High resolution T1 estimation from multiple low resolution magnetic resonance images. 1036-1039 2015 ISBI https://doi.org/10.1109/ISBI.2015.7164048 https://www.wikidata.org/entity/Q62663810 conf/isbi/2015 db/conf/isbi/isbi2015.html#SteenkistePJDS15

Pawel Miroslaw Stano Arnold J. den Dekker Zsófia Lendek Robert Babuska Convex saturated particle filter. 2494-2503 2014 50 Autom. 10 https://doi.org/10.1016/j.automatica.2014.08.026 db/journals/automatica/automatica50.html#StanoDLB14

Tom Roelandts Kees Joost Batenburg Arnold J. den Dekker Jan Sijbers The reconstructed residual error: A novel segmentation evaluation measure for reconstructed images in tomography. 28-37 2014 126 Comput. Vis. Image Underst. https://doi.org/10.1016/j.cviu.2014.05.007 https://www.wikidata.org/entity/Q62663847 db/journals/cviu/cviu126.html#RoelandtsBDS14

Arturo Tejada Arnold J. den Dekker A comparison between minimum variance control and other online compensation methods for specimen drift in transmission electron microscopy. 247-271 2014 25 Multidimens. Syst. Signal Process. 2 https://doi.org/10.1007/s11045-013-0246-3 db/journals/mssp/mssp25.html#TejadaD14

Jeny Rajan Arnold J. den Dekker Jan Sijbers A new non-local maximum likelihood estimation method for Rician noise reduction in magnetic resonance images using the Kolmogorov-Smirnov test. 16-23 2014 103 Signal Process. https://doi.org/10.1016/j.sigpro.2013.12.018 https://www.wikidata.org/entity/Q62663828 db/journals/sigpro/sigpro103.html#RajanDS14

Pawel Stano Zsófia Lendek Jelmer Braaksma Robert Babuska Cees de Keizer Arnold J. den Dekker Parametric Bayesian Filters for Nonlinear Stochastic Dynamical Systems: A Survey. 1607-1624 2013 43 IEEE Trans. Cybern. 6 https://doi.org/10.1109/TSMCC.2012.2230254 https://www.wikidata.org/entity/Q38113783 db/journals/tcyb/tcyb43.html#StanoLBBKD13

Jan S. Erkelens Arturo Tejada Arnold J. den Dekker Identification of Time Series Models From Segments - Application to Scanning Transmission Electron Microscopy Images. 3231-3242 2013 62 IEEE Trans. Instrum. Meas. 12 https://doi.org/10.1109/TIM.2013.2272198 db/journals/tim/tim62.html#ErkelensTD13

Jeny Rajan Arnold J. den Dekker Jaber Juntu Jan Sijbers A New Nonlocal Maximum Likelihood Estimation Method for Denoising Magnetic Resonance Images. 451-458 2013 PReMI https://doi.org/10.1007/978-3-642-45062-4_62 https://www.wikidata.org/entity/Q62663858 conf/premi/2013 db/conf/premi/premi2013.html#RajanDJS13

Arturo Tejada Arnold J. den Dekker Defocus Polar rOse Estimation Method (POEM): A Fast Defocus Estimation Method for STEM. 2723-2730 2012 61 IEEE Trans. Instrum. Meas. 10 https://doi.org/10.1109/TIM.2012.2193650 db/journals/tim/tim61.html#TejadaD12

Arturo Tejada Pauline Vos Arnold J. den Dekker Towards an adaptive minimum variance control scheme for specimen drift compensation in transmission electron microscopes. 1-6 2011 nDS https://doi.org/10.1109/nDS.2011.6076835 conf/nds/2011 db/conf/nds/nds2011.html#TejadaVD11

Dirk H. J. Poot Arnold J. den Dekker Eric Achten Marleen Verhoye Jan Sijbers Optimal Experimental Design for Diffusion Kurtosis Imaging. 819-829 2010 29 IEEE Trans. Medical Imaging 3 https://doi.org/10.1109/TMI.2009.2037915 https://www.wikidata.org/entity/Q48285322 db/journals/tmi/tmi29.html#PootDAVS10

Matthan W. A. Caan Ganesh Khedoe Dirk H. J. Poot Arjan den Dekker Sílvia Delgado Olabarriaga Kees Grimbergen Lucas J. van Vliet Frans M. Vos Estimation of Diffusion Properties in Crossing Fiber Bundles. 1504-1515 2010 29 IEEE Trans. Medical Imaging 8 https://doi.org/10.1109/TMI.2010.2049577 https://www.wikidata.org/entity/Q48159378 db/journals/tmi/tmi29.html#CaanKPDOGVV10

Matthan W. A. Caan Ganesh Khedoe Dirk H. J. Poot Arjan den Dekker Sílvia Delgado Olabarriaga Kees Grimbergen Lucas J. van Vliet Frans Vos Adaptive Noise Filtering for Accurate and Precise Diffusion Estimation in Fiber Crossings. 167-174 2010 MICCAI (1) https://doi.org/10.1007/978-3-642-15705-9_21 https://www.wikidata.org/entity/Q85108136 conf/miccai/2010-1 db/conf/miccai/miccai2010-1.html#CaanKPDOGVV10

Arnold J. den Dekker Dirk H. J. Poot Robert Bos Jan Sijbers Likelihood-Based Hypothesis Tests for Brain Activation Detection From MRI Data Disturbed by Colored Noise: A Simulation Study. 287-296 2009 28 IEEE Trans. Medical Imaging 2 https://doi.org/10.1109/TMI.2008.2004427 https://www.wikidata.org/entity/Q33404958 db/journals/tmi/tmi28.html#DekkerPBS09

Arturo Tejada Saartje W. van der Hoeven Arnold J. den Dekker Paul M. J. Van den Hof Towards automatic control of scanning transmission electron microscopes. 788-793 2009 CCA/ISIC https://doi.org/10.1109/CCA.2009.5280968 conf/IEEEcca/2009 db/conf/IEEEcca/IEEEcca2009.html#TejadaHDH09 Xavier Bombois Arnold J. den Dekker Märta Barenthin Paul M. J. Van den Hof Effect of model structure and signal-to-noise ratio on finite-time uncertainty bounding in prediction error identification. 494-499 2009 CDC https://doi.org/10.1109/CDC.2009.5400852 conf/cdc/2009 db/conf/cdc/cdc2009.html#BomboisDBH09 Arturo Tejada Wouter Van den Broek Saartje W. van der Hoeven Arnold J. den Dekker Towards STEM control: Modeling framework and development of a sensor for defocus control. 8310-8315 2009 CDC https://doi.org/10.1109/CDC.2009.5400416 conf/cdc/2009 db/conf/cdc/cdc2009.html#TejadaBHD09 Dirk H. J. Poot Jan Sijbers Arnold J. den Dekker An exploration of spatial similarities in temporal noise spectra in fMRI measurements. 69142F 2008 Image Processing https://doi.org/10.1117/12.769484 conf/miip/2008 db/conf/miip/miip2008.html#PootSD08 Jan Sijbers Arnold J. den Dekker Dirk H. J. Poot Robert Bos Marleen Verhoye Nadja Van Camp Annemie van der Linden Robust estimation of the noise variance from background MR data. 61446B 2006 Image Processing https://doi.org/10.1117/12.652616 https://www.wikidata.org/entity/Q58197680 conf/miip/2006 db/conf/miip/miip2006.html#SijbersDPBVCL06

Jan Sijbers Arnold J. den Dekker Generalized likelihood ratio tests for complex fMRI data: a Simulation study. 604-611 2005 24 IEEE Trans. Medical Imaging 5 https://doi.org/10.1109/TMI.2005.844075 https://www.wikidata.org/entity/Q30989637 db/journals/tmi/tmi24.html#SijbersD05

Jan Sijbers Arnold Jan den Dekker Robert Bos A Likelihood Ratio Test for Functional MRI Data Analysis to Account for Colored Noise. 538-546 2005 conf/acivs/2005 ACIVS https://doi.org/10.1007/11558484_68 https://www.wikidata.org/entity/Q62664043 db/conf/acivs/acivs2005.html#SijbersDB05 Arnold J. den Dekker Jan Sijbers Detection of brain activation from magnitude fMRI data using a Generalized Likelihood Ratio Test. 233-236 2004 EUSIPCO https://ieeexplore.ieee.org/document/7079955/ conf/eusipco/2004 db/conf/eusipco/eusipco2004.html#DekkerS04 Theo G. S. M. Rijks Joost T. M. van Beek M. J. E. Ulenaers Jeroen De Coster Robert Puers Arnold J. den Dekker L. van Teeffelen Passive integration and RF MEMS: a toolkit for adaptive LC circuits. 269-272 2003 ESSCIRC https://doi.org/10.1109/ESSCIRC.2003.1257124 conf/esscirc/2003 db/conf/esscirc/esscirc2003.html#RijksBUCPDT03

Sandra Van Aert Arnold J. den Dekker Adriaan van den Bos Dirk Van Dyck High-resolution electron microscopy: from imaging toward measuring. 611-615 2002 51 IEEE Trans. Instrum. Meas. 4 https://doi.org/10.1109/TIM.2002.802250 https://www.wikidata.org/entity/Q60022634 db/journals/tim/tim51.html#AertDBD02

Jan Sijbers Arnold J. den Dekker Erik Raman Dirk Van Dyck Parameter estimation from magnitude MR images. 109-114 1999 10 Int. J. Imaging Syst. Technol. 2 https://doi.org/10.1002/(SICI)1098-1098(1999)10:2<109::AID-IMA2>3.0.CO;2-R db/journals/imst/imst10.html#SijbersDRD99

Jan Sijbers Arnold Jan den Dekker Marleen Verhoye Annemarie van der Linden Dirk Van Dyck Adaptive anisotropic noise filtering for magnitude MR data. 1999 Image Processing https://doi.org/10.1117/12.348541 https://www.wikidata.org/entity/Q58197732 conf/miip/1999 db/conf/miip/miip1999.html#SijbersDVLD99

Jan Sijbers Arnold J. den Dekker Paul Scheunders Dirk Van Dyck Maximum Likelihood Estimation of Rician Distribution Parameters. 357-361 1998 17 IEEE Trans. Medical Imaging 3 db/journals/tmi/tmi17.html#SijbersDSD98 https://doi.org/10.1109/42.712125 https://www.wikidata.org/entity/Q55067915

Arnold Jan den Dekker Jan Sijbers Marleen Verhoye Dirk Van Dyck Maximum-likelihood signal estimation in phase contrast magnitude MR images. 1998 Image Processing https://doi.org/10.1117/12.310919 https://www.wikidata.org/entity/Q62664123 conf/miip/1998 db/conf/miip/miip1998.html#DekkerSVD98 Jan Sijbers Arnold Jan den Dekker Marleen Verhoye Erik R. R. Raman Dirk Van Dyck Optimal estimation of T2 maps from magnitude MR images. 1998 Image Processing https://doi.org/10.1117/12.310915 https://www.wikidata.org/entity/Q62664127 conf/miip/1998 db/conf/miip/miip1998.html#SijbersDVRD98 Arnold J. den Dekker Coherent model-based optical resolution and SNR. 1-4 1996 EUSIPCO https://ieeexplore.ieee.org/document/7083228/ conf/eusipco/1996 db/conf/eusipco/eusipco1996.html#Dekker96 Arnold J. den Dekker Model-based optical two-point resolution. 2395-2398 1996 ICASSP https://doi.org/10.1109/ICASSP.1996.547765 https://doi.ieeecomputersociety.org/10.1109/ICASSP.1996.547765 conf/icassp/1996 db/conf/icassp/icassp1996.html#Dekker96 Eric Achten Sandra Van Aert Vincenzo Anania Johan Van Audekerke Robert Babuska Kees Joost Batenburg Shabab Bazrafkan J. T. M. van BeekJoost T. M. van Beek Jan De Beenhouwer Quinten Beirinckx Thibo Billiet Marcus Bjork Piet Bladt Xavier Bombois Adriaan van den Bos Robert Bos Jelmer Braaksma Wouter Van den Broek Annemieke E. Buikema Riwaj Byanju Matthan W. A. Caan Nadja Van Camp Quinten Collier Jeroen De Coster Dirk Van Dyck Jan S. Erkelens Raúl San José Estépar Diana GiraldoDiana L. Giraldo Cornelis A. GrimbergenKees Grimbergen Saartje W. van der Hoeven Paul M. J. Van den Hof Ben Jeurissen Jaber Juntu Cees de Keizer Chandrasekharan Kesavadas Ganesh Khedoe Stefan Klein 0001 Zsófia Lendek Annemarie van der LindenAnnemie van der Linden Jannes Merckx Michele Nicastro Wiro J. Niessen Sílvia Delgado Olabarriaga Matthias J. P. van Osch Willem Jan Palenstijn Paul M. Parizel Merlijn van der PlasMerlijn C. E. van der Plas Palanisamy Ponnusamy Dirk H. J. Poot Robert Puers Jeny Rajan Erik RamanErik R. R. Raman Gabriel Ramos-Llordén Jens Renders Theo G. S. M. Rijks Tom Roelandts Emanoel R. Sabidussi Paul Scheunders Hilde Segers Banafshe Shafieizargar Jan Sijbers Pawel StanoPawel Miroslaw Stano Gwendolyn Van Steenkiste P. V. Sudeep Märta Barenthin SybergMärta Barenthin L. van Teeffelen Arturo Tejada M. J. E. Ulenaers Floris Vanhevel Gonzalo Vegas-Sánchez-Ferrero Jelle Veraart Marleen Verhoye Lucas J. van Vliet Frans VosFrans M. Vos Pauline Vos