diff --git a/.docker/app_dockerfile b/.docker/app_dockerfile index 022c07ea6..311508bc0 100644 --- a/.docker/app_dockerfile +++ b/.docker/app_dockerfile @@ -15,16 +15,19 @@ ENV NODE_ENV=production # These get replaced by the entrypoint script for production builds. # Set the real values in `.env` files or an external docker-compose. -ARG VUE_APP_API_URL=magic-api-url -ARG VUE_APP_LOGO_URL=magic-logo-url -ARG VUE_APP_HOMEPAGE_URL=magic-homepage-url -ARG VUE_APP_EDITABLE_INVENTORY=magic-setting -ARG VUE_APP_WEBSITE_TITLE=magic-title -ARG VUE_APP_QR_CODE_RESOLVER_URL=magic-qr-code-resolver-url -ARG VUE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT=magic-generate-id-setting +# ARG VITE_APP_API_URL=magic-api-url +ARG VITE_APP_API_URL=$VITE_APP_API_URL +ARG VITE_APP_LOGO_URL=magic-logo-url +ARG VITE_APP_HOMEPAGE_URL=magic-homepage-url +ARG VITE_APP_EDITABLE_INVENTORY=magic-setting +ARG VITE_APP_WEBSITE_TITLE=magic-title +ARG VITE_APP_QR_CODE_RESOLVER_URL=magic-qr-code-resolver-url +ARG VITE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT=magic-generate-id-setting COPY webapp ./ -RUN --mount=type=bind,target=/.git,src=./.git VUE_APP_GIT_VERSION=$(node scripts/get-version.js) /node_modules/.bin/vue-cli-service build +RUN --mount=type=bind,target=/.git,src=./.git VITE_APP_GIT_VERSION=$(node scripts/get-version.js) + +RUN yarn build FROM node:20-bullseye AS production diff --git a/.docker/app_entrypoint.sh b/.docker/app_entrypoint.sh index 8aae87bdf..df6698a6f 100755 --- a/.docker/app_entrypoint.sh +++ b/.docker/app_entrypoint.sh @@ -8,8 +8,8 @@ set -e ROOT_DIR=/app/dist -if [ -z "$VUE_APP_API_URL" ]; then - echo "VUE_APP_API_URL is unset and we are in production mode. Exiting." +if [ -z "$VITE_APP_API_URL" ]; then + echo "VITE_APP_API_URL is unset and we are in production mode. Exiting." echo "" echo "Found settings:" echo "" @@ -18,37 +18,37 @@ if [ -z "$VUE_APP_API_URL" ]; then exit 1 fi -# If the VUE_APP_GIT_VERSION has not been overridden, set it to the default +# If the VITE_APP_GIT_VERSION has not been overridden, set it to the default # from package.json; the real `.git` version, if available, should still # take precedence. -if [ -z "$VUE_APP_GIT_VERSION" ]; then - VUE_APP_GIT_VERSION="0.0.0-git" +if [ -z "$VITE_APP_GIT_VERSION" ]; then + VITE_APP_GIT_VERSION="0.0.0-git" fi echo "Replacing env vars in Javascript files" echo "Settings:" echo "" -echo " APP_VERSION: ${VUE_APP_GIT_VERSION}" -echo " API_URL: ${VUE_APP_API_URL}" -echo " LOGO_URL: ${VUE_APP_LOGO_URL}" -echo " HOMEPAGE_URL: ${VUE_APP_HOMPAGE_URL}" -echo " EDITABLE_INVENTORY: ${VUE_APP_EDITABLE_INVENTORY}" -echo " WEBSITE_TITLE: ${VUE_APP_WEBSITE_TITLE}" -echo " QR_CODE_RESOLVER_URL: ${VUE_APP_QR_CODE_RESOLVER_URL}" -echo " AUTOMATICALLY_GENERATE_ID_DEFAULT: ${VUE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT}" +echo " APP_VERSION: ${VITE_APP_GIT_VERSION}" +echo " API_URL: ${VITE_APP_API_URL}" +echo " LOGO_URL: ${VITE_APP_LOGO_URL}" +echo " HOMEPAGE_URL: ${VITE_APP_HOMPAGE_URL}" +echo " EDITABLE_INVENTORY: ${VITE_APP_EDITABLE_INVENTORY}" +echo " WEBSITE_TITLE: ${VITE_APP_WEBSITE_TITLE}" +echo " QR_CODE_RESOLVER_URL: ${VITE_APP_QR_CODE_RESOLVER_URL}" +echo " AUTOMATICALLY_GENERATE_ID_DEFAULT: ${VITE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT}" echo "" echo "Patching..." for file in $ROOT_DIR/js/app.*.js* $ROOT_DIR/*html; do echo "$file" - sed -i "s|0.0.0-git|${VUE_APP_GIT_VERSION}|g" $file - sed -i "s|magic-api-url|${VUE_APP_API_URL}|g" $file - sed -i "s|magic-logo-url|${VUE_APP_LOGO_URL}|g" $file - sed -i "s|magic-homepage-url|${VUE_APP_HOMEPAGE_URL}|g" $file - sed -i "s|magic-setting|${VUE_APP_EDITABLE_INVENTORY}|g" $file - sed -i "s|magic-title|${VUE_APP_WEBSITE_TITLE}|g" $file - sed -i "s|magic-qr-code-resolver-url|${VUE_APP_QR_CODE_RESOLVER_URL}|g" $file - sed -i "s|magic-generate-id-setting|${VUE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT}|g" $file + sed -i "s|0.0.0-git|${VITE_APP_GIT_VERSION}|g" $file + sed -i "s|magic-api-url|${VITE_APP_API_URL}|g" $file + sed -i "s|magic-logo-url|${VITE_APP_LOGO_URL}|g" $file + sed -i "s|magic-homepage-url|${VITE_APP_HOMEPAGE_URL}|g" $file + sed -i "s|magic-setting|${VITE_APP_EDITABLE_INVENTORY}|g" $file + sed -i "s|magic-title|${VITE_APP_WEBSITE_TITLE}|g" $file + sed -i "s|magic-qr-code-resolver-url|${VITE_APP_QR_CODE_RESOLVER_URL}|g" $file + sed -i "s|magic-generate-id-setting|${VITE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT}|g" $file done echo "Done!" diff --git a/CHANGELOG.md b/CHANGELOG.md index c16a8f32a..51c5956f2 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,47 +10,44 @@ Many thanks to all contributors: developers, user feedback and deployment manage ## Breaking changes -* The Python server has been entirely repackaged with `uv` for much more streamlined dependency management (especially for external plugins). If you are using the docker deployments, then nothing should change for you, but developers may need to adjust their development setups following the instructions at [INSTALL.md](./INSTALL.md) +- The Python server has been entirely repackaged with `uv` for much more streamlined dependency management (especially for external plugins). If you are using the docker deployments, then nothing should change for you, but developers may need to adjust their development setups following the instructions at [INSTALL.md](./INSTALL.md) ## Highlights -* The table component used to display all items has been entirely rewritten, and is now more visually responsive and can accommodate custom schemas/components. -* QR code generation and scanning for all items, optionally using the new [datalab pURL service](https://purl.datalab-org.io/) when configured with `VUE_APP_QR_CODE_RESOLVER_URL`. -* Following from the block info from the last release, the API now reports the schemas it is using at `/info/types`, ready for these to become more easily configurable at the deployment level. The edit page and item table are beginning to dynamically use this information. -* Improvements to the collections UI, allowing items to be added to collections more easily after creation. -* Ability to selectively share items with certain users; this will soon be expanded to user groups and projects (via collections) with configurable defaults. -* Several bug fixes to the UI, API (timezone consistency, tweaks to the LLM integration, better handling of permissions edge cases) -* Ease-of-use features and new configuration options for deployments. - +- The table component used to display all items has been entirely rewritten, and is now more visually responsive and can accommodate custom schemas/components. +- QR code generation and scanning for all items, optionally using the new [datalab pURL service](https://purl.datalab-org.io/) when configured with `VITE_APP_QR_CODE_RESOLVER_URL`. +- Following from the block info from the last release, the API now reports the schemas it is using at `/info/types`, ready for these to become more easily configurable at the deployment level. The edit page and item table are beginning to dynamically use this information. +- Improvements to the collections UI, allowing items to be added to collections more easily after creation. +- Ability to selectively share items with certain users; this will soon be expanded to user groups and projects (via collections) with configurable defaults. +- Several bug fixes to the UI, API (timezone consistency, tweaks to the LLM integration, better handling of permissions edge cases) +- Ease-of-use features and new configuration options for deployments. **Full Changelog**: https://github.com/datalab-org/datalab/compare/v0.4.4...v0.5.0 - ## v0.4.4 (August 2024) This release primarily contains some bugfixes for the echem block, as well as tidying in preparation of the next release. ### What's Changed -* Removed unused css by @BenjaminCharmes in https://github.com/datalab-org/datalab/pull/826 -* Remove final mentions of odbx.science by @ml-evs in https://github.com/datalab-org/datalab/pull/827 -* Add routes for resolving items by refcode by @ml-evs in https://github.com/datalab-org/datalab/pull/807 -* Fix block errors caused by seemingly defunct theme options in bokeh by @ml-evs in https://github.com/datalab-org/datalab/pull/829 -* Update to latest navani version, fixing Neware normalisation issues by @ml-evs in https://github.com/datalab-org/datalab/pull/836 -* Reload echem data by default, unless disabled by @ml-evs in https://github.com/datalab-org/datalab/pull/840 +- Removed unused css by @BenjaminCharmes in https://github.com/datalab-org/datalab/pull/826 +- Remove final mentions of odbx.science by @ml-evs in https://github.com/datalab-org/datalab/pull/827 +- Add routes for resolving items by refcode by @ml-evs in https://github.com/datalab-org/datalab/pull/807 +- Fix block errors caused by seemingly defunct theme options in bokeh by @ml-evs in https://github.com/datalab-org/datalab/pull/829 +- Update to latest navani version, fixing Neware normalisation issues by @ml-evs in https://github.com/datalab-org/datalab/pull/836 +- Reload echem data by default, unless disabled by @ml-evs in https://github.com/datalab-org/datalab/pull/840 **Full Changelog**: https://github.com/datalab-org/datalab/compare/v0.4.3...v0.4.4 - ## v0.4.3 (July 2024) This release simply re-enables Firefox testing in the CI, and reorganises the associated cloud runs. ### What's Changed -* Re-enable Firefox e2e tests by @ml-evs in https://github.com/datalab-org/datalab/pull/711 -**Full Changelog**: https://github.com/datalab-org/datalab/compare/v0.4.2...v0.4.3 +- Re-enable Firefox e2e tests by @ml-evs in https://github.com/datalab-org/datalab/pull/711 +**Full Changelog**: https://github.com/datalab-org/datalab/compare/v0.4.2...v0.4.3 ## v0.4.2 (July 2024) @@ -58,15 +55,15 @@ This release adds an update to the batch item creation UI to include other item ### What's Changed -* Rebrand repo to the group-agnostic gh organisation by @ml-evs in https://github.com/datalab-org/datalab/pull/809 -* Change docker compose restart policy to "unless-stopped" by @ml-evs in https://github.com/datalab-org/datalab/pull/810 -* Update INSTALL.md by @jdbocarsly in https://github.com/datalab-org/datalab/pull/816 -* Fix logo link taking full screen width by @ml-evs in https://github.com/datalab-org/datalab/pull/821 -* Improve sample table component by @BenjaminCharmes in https://github.com/datalab-org/datalab/pull/784 -* Add simple component test for `ChemFormInput` by @ml-evs in https://github.com/datalab-org/datalab/pull/743 -* Add ability to add batch of cells by @jdbocarsly in https://github.com/datalab-org/datalab/pull/797 -* Add config options to automatically activate accounts from GitHub, email or any auth source by @ml-evs in https://github.com/datalab-org/datalab/pull/822 -* Bump version number to 0.4.2 by @ml-evs in https://github.com/datalab-org/datalab/pull/824 +- Rebrand repo to the group-agnostic gh organisation by @ml-evs in https://github.com/datalab-org/datalab/pull/809 +- Change docker compose restart policy to "unless-stopped" by @ml-evs in https://github.com/datalab-org/datalab/pull/810 +- Update INSTALL.md by @jdbocarsly in https://github.com/datalab-org/datalab/pull/816 +- Fix logo link taking full screen width by @ml-evs in https://github.com/datalab-org/datalab/pull/821 +- Improve sample table component by @BenjaminCharmes in https://github.com/datalab-org/datalab/pull/784 +- Add simple component test for `ChemFormInput` by @ml-evs in https://github.com/datalab-org/datalab/pull/743 +- Add ability to add batch of cells by @jdbocarsly in https://github.com/datalab-org/datalab/pull/797 +- Add config options to automatically activate accounts from GitHub, email or any auth source by @ml-evs in https://github.com/datalab-org/datalab/pull/822 +- Bump version number to 0.4.2 by @ml-evs in https://github.com/datalab-org/datalab/pull/824 **Full Changelog**: https://github.com/datalab-org/datalab/compare/v0.4.1...v0.4.2 @@ -76,25 +73,25 @@ This minor release adds some quality-of-life fixes to the UI, a new cell format ### What's Changed -* Run vue3-recommended linting by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/756 -* Corrected blockInfo computed property value by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/775 -* Changes to pre-commit by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/785 -* Add 'optical' cellFormat by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/788 -* Remove cheminventory import task (which is now in `datalab-api`) by @ml-evs in https://github.com/the-grey-group/datalab/pull/793 -* Add gpt4o and other updated models by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/736 -* Report runtime server config at `/info` and use this in UI by @ml-evs in https://github.com/the-grey-group/datalab/pull/801 -* Development docker, pre-commit and eslint updates & refactoring by @ml-evs in https://github.com/the-grey-group/datalab/pull/805 -* Disable `ChemicalFormula` component by @ml-evs in https://github.com/the-grey-group/datalab/pull/806 +- Run vue3-recommended linting by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/756 +- Corrected blockInfo computed property value by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/775 +- Changes to pre-commit by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/785 +- Add 'optical' cellFormat by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/788 +- Remove cheminventory import task (which is now in `datalab-api`) by @ml-evs in https://github.com/the-grey-group/datalab/pull/793 +- Add gpt4o and other updated models by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/736 +- Report runtime server config at `/info` and use this in UI by @ml-evs in https://github.com/the-grey-group/datalab/pull/801 +- Development docker, pre-commit and eslint updates & refactoring by @ml-evs in https://github.com/the-grey-group/datalab/pull/805 +- Disable `ChemicalFormula` component by @ml-evs in https://github.com/the-grey-group/datalab/pull/806 **Full Changelog**: https://github.com/the-grey-group/datalab/compare/v0.4.0...v0.4.1 ## v0.4.0 (June 2024) -This release of *datalab* contains significant new functionality whilst broadly maintaining compatibility with the 0.3.x series. +This release of _datalab_ contains significant new functionality whilst broadly maintaining compatibility with the 0.3.x series. -It is also accompanied by the first release of the *datalab* Python API package (https://github.com/datalab-org/datalab-api), as well as the first release of the Ansible playbooks and Terraform rules (Azure only, for now) to automated *datalab* deployments (https://github.com/datalab-org/datalab-ansible-terraform). +It is also accompanied by the first release of the _datalab_ Python API package (https://github.com/datalab-org/datalab-api), as well as the first release of the Ansible playbooks and Terraform rules (Azure only, for now) to automated _datalab_ deployments (https://github.com/datalab-org/datalab-ansible-terraform). -Special thanks go to @vrajpatel9988 and especially @BenjaminCharmes who both made their first contributions to *datalab* in this release! +Special thanks go to @vrajpatel9988 and especially @BenjaminCharmes who both made their first contributions to _datalab_ in this release! ### Highlights @@ -103,12 +100,11 @@ Special thanks go to @vrajpatel9988 and especially @BenjaminCharmes who both mad - Electrochemistry block: support for Neware file formats, MPR files written by ECLab > 11.50 and cyclic voltammetry data. - Equipment: A new entry type has been added to record the equipment in the lab used for certain operations - Better default permissions on inventories: users can now create and edit inventory entries without requiring an admin. -- Automatic random IDs: The ability to generate random IDs for new samples was added, allowing *datalab* to be used as the source of IDs. +- Automatic random IDs: The ability to generate random IDs for new samples was added, allowing _datalab_ to be used as the source of IDs. - Enhanced block-level documentation in the UI, and dynamic syncing of block-type metadata for improved extensibility. -- Added the admin ability to verify all user accounts before they can use *datalab*. +- Added the admin ability to verify all user accounts before they can use _datalab_. - General improvements to block error reporting and reactivity, as well as several bug fixes. - ### Notes for upgrading to v0.4.0 - Users now have an `"unverified"` status by default. For some deployments, this may require an admin to first self-verify their account directly with a database update (`"account_status" -> "active"`), after which they can verify all other users in the UI. @@ -116,89 +112,91 @@ Special thanks go to @vrajpatel9988 and especially @BenjaminCharmes who both mad - Similarly, the development set up has changed slightly and may need to be remade after upgrading. ### What's Changed -* Dynamically set production app container config in entrypoint by @ml-evs in https://github.com/the-grey-group/datalab/pull/605 -* Visual style improvements, test updates and improved block UI by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/608 -* Refactor mail config settings by @ml-evs in https://github.com/the-grey-group/datalab/pull/614 -* Add Neware support and fix MPR issue by @ml-evs in https://github.com/the-grey-group/datalab/pull/617 -* Hotfix for block errors and warnings UI that arise over multiple renderings by @ml-evs in https://github.com/the-grey-group/datalab/pull/615 -* Use newly released galvani and NewareNDA packages by @ml-evs in https://github.com/the-grey-group/datalab/pull/625 -* Update xrdml parser so it works with v2.0 by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/631 -* Restrict relationship types in UI synthesis and constituents tables by @ml-evs in https://github.com/the-grey-group/datalab/pull/630 -* Update copyright year in LICENSE by @ml-evs in https://github.com/the-grey-group/datalab/pull/622 -* Allow browser context menu in tinymce fields by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/635 -* Allow any authenticated user to generate an API key by @ml-evs in https://github.com/the-grey-group/datalab/pull/641 -* Serve the identifier prefix in the `/info` response by @ml-evs in https://github.com/the-grey-group/datalab/pull/638 -* Return user role from `/get-current-user` endpoint by @ml-evs in https://github.com/the-grey-group/datalab/pull/644 -* Created component for editing account settings by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/627 -* User registration: default display name to GitHub username when no profile name is set by @ml-evs in https://github.com/the-grey-group/datalab/pull/655 -* Fix typo where CI tests were never run in chrome by @ml-evs in https://github.com/the-grey-group/datalab/pull/656 -* Temporarily disable Firefox tests by @ml-evs in https://github.com/the-grey-group/datalab/pull/659 -* Bump webpack-dev-middleware from 5.3.3 to 5.3.4 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/660 -* Bump follow-redirects from 1.15.4 to 1.15.6 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/647 -* Allow echem block to plot non-cyclic data by @ml-evs in https://github.com/the-grey-group/datalab/pull/665 -* Add optional functionality to add starting materials from within the webapp by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/642 -* Added validation for the user update route/UI by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/646 -* Improve block warning/error reactivity in the UI by @ml-evs in https://github.com/the-grey-group/datalab/pull/666 -* Add ability to generate .csv files within block callbacks by @ml-evs in https://github.com/the-grey-group/datalab/pull/621 -* Debug flaky e2e tests by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/670 -* Add option to generate ID automatically when creating items by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/668 -* Add default config for `VUE_APP_EDITABLE_INVENTORY` by @ml-evs in https://github.com/the-grey-group/datalab/pull/673 -* Add codecov upload to CI by @ml-evs in https://github.com/the-grey-group/datalab/pull/677 -* Disable codecov PR annotations by @ml-evs in https://github.com/the-grey-group/datalab/pull/681 -* Add "equipment" item type by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/531 -* Convert Whinchat to use langchain by @vrajpatel9988 in https://github.com/the-grey-group/datalab/pull/661 -* Bump langchain-core from 0.1.33 to 0.1.35 in /pydatalab by @dependabot in https://github.com/the-grey-group/datalab/pull/686 -* Bump prettier, pre-commit hooks and some other deps by @ml-evs in https://github.com/the-grey-group/datalab/pull/685 -* Allow starting materials and equipment to be edited by normal users by @ml-evs in https://github.com/the-grey-group/datalab/pull/672 -* Bump pymongo from 4.6.2 to 4.6.3 in /pydatalab by @dependabot in https://github.com/the-grey-group/datalab/pull/689 -* Use mocked API keys in API tests to fake different authentication scenarios by @ml-evs in https://github.com/the-grey-group/datalab/pull/676 -* Significant refactor of deployment docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/690 -* Enable ORCID connection by default by @ml-evs in https://github.com/the-grey-group/datalab/pull/693 -* Only fix PRs with pre-commit CI when asked by @ml-evs in https://github.com/the-grey-group/datalab/pull/697 -* Upgrade cypress and other testing deps to allow Firefox testing by @ml-evs in https://github.com/the-grey-group/datalab/pull/699 -* Update README with links to Python API by @ml-evs in https://github.com/the-grey-group/datalab/pull/701 -* Add public deployment badge in README by @ml-evs in https://github.com/the-grey-group/datalab/pull/702 -* Separate each browser test into separate run and temporarily disable Firefox by @ml-evs in https://github.com/the-grey-group/datalab/pull/703 -* Add admin dashboard with user management controls by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/674 -* Added a way to refresh API Key from Account Settings UI by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/700 -* Recreate user index with new settings if already existing by @ml-evs in https://github.com/the-grey-group/datalab/pull/707 -* Fix for saving collection blocks and error handling for excessively large blocks by @ml-evs in https://github.com/the-grey-group/datalab/pull/709 -* Add `account_status` field (active, unverified or deactivated) to People model by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/687 -* Update deployment instructions wrt. new datalab-ansible-terraform repo by @ml-evs in https://github.com/the-grey-group/datalab/pull/712 -* Add UI for email registration/login by @ml-evs in https://github.com/the-grey-group/datalab/pull/528 -* Serve data about available block types in API by @ml-evs in https://github.com/the-grey-group/datalab/pull/667 -* Add upper pin to rosettasciio by @ml-evs in https://github.com/the-grey-group/datalab/pull/720 -* Update tests for current user by @ml-evs in https://github.com/the-grey-group/datalab/pull/723 -* Add ability to select between different chat models in the whinchat by @vrajpatel9988 in https://github.com/the-grey-group/datalab/pull/680 -* Bump Flask and Werkzeug to the latest releases on the v3 series by @ml-evs in https://github.com/the-grey-group/datalab/pull/722 -* Added `HelpBubble` component to display inline documentation in the UI by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/706 -* Fix API key help message by @ml-evs in https://github.com/the-grey-group/datalab/pull/725 -* Fix README badges by @ml-evs in https://github.com/the-grey-group/datalab/pull/730 -* [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/the-grey-group/datalab/pull/728 -* Revert pre-commit autoupdate for prettier by @ml-evs in https://github.com/the-grey-group/datalab/pull/734 -* Populating dynamic block-level documentation as UI tooltips by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/719 -* Make account status on registration be configurable by provider by @ml-evs in https://github.com/the-grey-group/datalab/pull/733 -* Add notification-dot for user with unverified account_status by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/724 -* Consider account status during auth and refactor API around blueprints by @ml-evs in https://github.com/the-grey-group/datalab/pull/727 -* Add gravatar instructions and tweak account settings modal by @ml-evs in https://github.com/the-grey-group/datalab/pull/744 -* Add block help to block title by @ml-evs in https://github.com/the-grey-group/datalab/pull/737 -* Fix NMR block layout issue by @ml-evs in https://github.com/the-grey-group/datalab/pull/745 -* Fix issue with landing page and tweak default docker-compose deployment by @ml-evs in https://github.com/the-grey-group/datalab/pull/746 -* Improve admin dashboard styling and functionality by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/748 -* Add `API_URL` as a `meta` tag in HTML header of all UI responses by @ml-evs in https://github.com/the-grey-group/datalab/pull/750 -* Add `CONFIG.APP_URL` to allow for customisable redirects on login/registration by @ml-evs in https://github.com/the-grey-group/datalab/pull/749 -* Fix StyledInput component (v2) by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/751 -* Bump version numbers by @ml-evs in https://github.com/the-grey-group/datalab/pull/753 -* Add a Tabular data block that can handle simple CSVs and text files by @ml-evs in https://github.com/the-grey-group/datalab/pull/592 -* Remove GET-out of route permissions by @ml-evs in https://github.com/the-grey-group/datalab/pull/754 -* Tweak mount points, production Docker entrypoint and development environment by @ml-evs in https://github.com/the-grey-group/datalab/pull/763 -* Default to ORCID ID as display name when ORCID user's name is private by @ml-evs in https://github.com/the-grey-group/datalab/pull/769 -* Add process lock for remote filesystem scraper by @ml-evs in https://github.com/the-grey-group/datalab/pull/562 -* Bump version number to v0.4.0 by @ml-evs in https://github.com/the-grey-group/datalab/pull/770 + +- Dynamically set production app container config in entrypoint by @ml-evs in https://github.com/the-grey-group/datalab/pull/605 +- Visual style improvements, test updates and improved block UI by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/608 +- Refactor mail config settings by @ml-evs in https://github.com/the-grey-group/datalab/pull/614 +- Add Neware support and fix MPR issue by @ml-evs in https://github.com/the-grey-group/datalab/pull/617 +- Hotfix for block errors and warnings UI that arise over multiple renderings by @ml-evs in https://github.com/the-grey-group/datalab/pull/615 +- Use newly released galvani and NewareNDA packages by @ml-evs in https://github.com/the-grey-group/datalab/pull/625 +- Update xrdml parser so it works with v2.0 by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/631 +- Restrict relationship types in UI synthesis and constituents tables by @ml-evs in https://github.com/the-grey-group/datalab/pull/630 +- Update copyright year in LICENSE by @ml-evs in https://github.com/the-grey-group/datalab/pull/622 +- Allow browser context menu in tinymce fields by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/635 +- Allow any authenticated user to generate an API key by @ml-evs in https://github.com/the-grey-group/datalab/pull/641 +- Serve the identifier prefix in the `/info` response by @ml-evs in https://github.com/the-grey-group/datalab/pull/638 +- Return user role from `/get-current-user` endpoint by @ml-evs in https://github.com/the-grey-group/datalab/pull/644 +- Created component for editing account settings by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/627 +- User registration: default display name to GitHub username when no profile name is set by @ml-evs in https://github.com/the-grey-group/datalab/pull/655 +- Fix typo where CI tests were never run in chrome by @ml-evs in https://github.com/the-grey-group/datalab/pull/656 +- Temporarily disable Firefox tests by @ml-evs in https://github.com/the-grey-group/datalab/pull/659 +- Bump webpack-dev-middleware from 5.3.3 to 5.3.4 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/660 +- Bump follow-redirects from 1.15.4 to 1.15.6 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/647 +- Allow echem block to plot non-cyclic data by @ml-evs in https://github.com/the-grey-group/datalab/pull/665 +- Add optional functionality to add starting materials from within the webapp by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/642 +- Added validation for the user update route/UI by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/646 +- Improve block warning/error reactivity in the UI by @ml-evs in https://github.com/the-grey-group/datalab/pull/666 +- Add ability to generate .csv files within block callbacks by @ml-evs in https://github.com/the-grey-group/datalab/pull/621 +- Debug flaky e2e tests by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/670 +- Add option to generate ID automatically when creating items by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/668 +- Add default config for `VITE_APP_EDITABLE_INVENTORY` by @ml-evs in https://github.com/the-grey-group/datalab/pull/673 +- Add codecov upload to CI by @ml-evs in https://github.com/the-grey-group/datalab/pull/677 +- Disable codecov PR annotations by @ml-evs in https://github.com/the-grey-group/datalab/pull/681 +- Add "equipment" item type by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/531 +- Convert Whinchat to use langchain by @vrajpatel9988 in https://github.com/the-grey-group/datalab/pull/661 +- Bump langchain-core from 0.1.33 to 0.1.35 in /pydatalab by @dependabot in https://github.com/the-grey-group/datalab/pull/686 +- Bump prettier, pre-commit hooks and some other deps by @ml-evs in https://github.com/the-grey-group/datalab/pull/685 +- Allow starting materials and equipment to be edited by normal users by @ml-evs in https://github.com/the-grey-group/datalab/pull/672 +- Bump pymongo from 4.6.2 to 4.6.3 in /pydatalab by @dependabot in https://github.com/the-grey-group/datalab/pull/689 +- Use mocked API keys in API tests to fake different authentication scenarios by @ml-evs in https://github.com/the-grey-group/datalab/pull/676 +- Significant refactor of deployment docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/690 +- Enable ORCID connection by default by @ml-evs in https://github.com/the-grey-group/datalab/pull/693 +- Only fix PRs with pre-commit CI when asked by @ml-evs in https://github.com/the-grey-group/datalab/pull/697 +- Upgrade cypress and other testing deps to allow Firefox testing by @ml-evs in https://github.com/the-grey-group/datalab/pull/699 +- Update README with links to Python API by @ml-evs in https://github.com/the-grey-group/datalab/pull/701 +- Add public deployment badge in README by @ml-evs in https://github.com/the-grey-group/datalab/pull/702 +- Separate each browser test into separate run and temporarily disable Firefox by @ml-evs in https://github.com/the-grey-group/datalab/pull/703 +- Add admin dashboard with user management controls by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/674 +- Added a way to refresh API Key from Account Settings UI by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/700 +- Recreate user index with new settings if already existing by @ml-evs in https://github.com/the-grey-group/datalab/pull/707 +- Fix for saving collection blocks and error handling for excessively large blocks by @ml-evs in https://github.com/the-grey-group/datalab/pull/709 +- Add `account_status` field (active, unverified or deactivated) to People model by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/687 +- Update deployment instructions wrt. new datalab-ansible-terraform repo by @ml-evs in https://github.com/the-grey-group/datalab/pull/712 +- Add UI for email registration/login by @ml-evs in https://github.com/the-grey-group/datalab/pull/528 +- Serve data about available block types in API by @ml-evs in https://github.com/the-grey-group/datalab/pull/667 +- Add upper pin to rosettasciio by @ml-evs in https://github.com/the-grey-group/datalab/pull/720 +- Update tests for current user by @ml-evs in https://github.com/the-grey-group/datalab/pull/723 +- Add ability to select between different chat models in the whinchat by @vrajpatel9988 in https://github.com/the-grey-group/datalab/pull/680 +- Bump Flask and Werkzeug to the latest releases on the v3 series by @ml-evs in https://github.com/the-grey-group/datalab/pull/722 +- Added `HelpBubble` component to display inline documentation in the UI by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/706 +- Fix API key help message by @ml-evs in https://github.com/the-grey-group/datalab/pull/725 +- Fix README badges by @ml-evs in https://github.com/the-grey-group/datalab/pull/730 +- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/the-grey-group/datalab/pull/728 +- Revert pre-commit autoupdate for prettier by @ml-evs in https://github.com/the-grey-group/datalab/pull/734 +- Populating dynamic block-level documentation as UI tooltips by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/719 +- Make account status on registration be configurable by provider by @ml-evs in https://github.com/the-grey-group/datalab/pull/733 +- Add notification-dot for user with unverified account_status by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/724 +- Consider account status during auth and refactor API around blueprints by @ml-evs in https://github.com/the-grey-group/datalab/pull/727 +- Add gravatar instructions and tweak account settings modal by @ml-evs in https://github.com/the-grey-group/datalab/pull/744 +- Add block help to block title by @ml-evs in https://github.com/the-grey-group/datalab/pull/737 +- Fix NMR block layout issue by @ml-evs in https://github.com/the-grey-group/datalab/pull/745 +- Fix issue with landing page and tweak default docker-compose deployment by @ml-evs in https://github.com/the-grey-group/datalab/pull/746 +- Improve admin dashboard styling and functionality by @BenjaminCharmes in https://github.com/the-grey-group/datalab/pull/748 +- Add `API_URL` as a `meta` tag in HTML header of all UI responses by @ml-evs in https://github.com/the-grey-group/datalab/pull/750 +- Add `CONFIG.APP_URL` to allow for customisable redirects on login/registration by @ml-evs in https://github.com/the-grey-group/datalab/pull/749 +- Fix StyledInput component (v2) by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/751 +- Bump version numbers by @ml-evs in https://github.com/the-grey-group/datalab/pull/753 +- Add a Tabular data block that can handle simple CSVs and text files by @ml-evs in https://github.com/the-grey-group/datalab/pull/592 +- Remove GET-out of route permissions by @ml-evs in https://github.com/the-grey-group/datalab/pull/754 +- Tweak mount points, production Docker entrypoint and development environment by @ml-evs in https://github.com/the-grey-group/datalab/pull/763 +- Default to ORCID ID as display name when ORCID user's name is private by @ml-evs in https://github.com/the-grey-group/datalab/pull/769 +- Add process lock for remote filesystem scraper by @ml-evs in https://github.com/the-grey-group/datalab/pull/562 +- Bump version number to v0.4.0 by @ml-evs in https://github.com/the-grey-group/datalab/pull/770 ### New Contributors -* @BenjaminCharmes made their first contribution in https://github.com/the-grey-group/datalab/pull/627 -* @vrajpatel9988 made their first contribution in https://github.com/the-grey-group/datalab/pull/661 + +- @BenjaminCharmes made their first contribution in https://github.com/the-grey-group/datalab/pull/627 +- @vrajpatel9988 made their first contribution in https://github.com/the-grey-group/datalab/pull/661 **Full Changelog**: https://github.com/the-grey-group/datalab/compare/v0.3.2...v0.4.0 @@ -208,8 +206,7 @@ This is a build hotfix for 0.3.x, where the incorrect versions of `navani` and ` ### What's Changed -* Force galvani and navani update in lockfile by @ml-evs in https://github.com/the-grey-group/datalab/pull/602 - +- Force galvani and navani update in lockfile by @ml-evs in https://github.com/the-grey-group/datalab/pull/602 **Full Changelog**: https://github.com/the-grey-group/datalab/compare/v0.3.1...v0.3.2 @@ -221,12 +218,12 @@ It also adds the ability for data blocks to pass errors and warnings to the fron ### What's Changed -* Pin prettier version in Webapp to same version that is specified in pre-commit by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/589 -* Downgrade pre-commit prettier by @ml-evs in https://github.com/the-grey-group/datalab/pull/593 -* CSS cleanup by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/588 -* Fix issue where plot data was always stored in db by @ml-evs in https://github.com/the-grey-group/datalab/pull/599 -* Add ability for block errors and warnings to be passed through API to UI by @ml-evs in https://github.com/the-grey-group/datalab/pull/590 -* Fix issue where previously uploaded file cannot be replaced by @ml-evs in https://github.com/the-grey-group/datalab/pull/594 +- Pin prettier version in Webapp to same version that is specified in pre-commit by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/589 +- Downgrade pre-commit prettier by @ml-evs in https://github.com/the-grey-group/datalab/pull/593 +- CSS cleanup by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/588 +- Fix issue where plot data was always stored in db by @ml-evs in https://github.com/the-grey-group/datalab/pull/599 +- Add ability for block errors and warnings to be passed through API to UI by @ml-evs in https://github.com/the-grey-group/datalab/pull/590 +- Fix issue where previously uploaded file cannot be replaced by @ml-evs in https://github.com/the-grey-group/datalab/pull/594 **Full Changelog**: https://github.com/the-grey-group/datalab/compare/v0.3.0...v0.3.1 @@ -246,82 +243,82 @@ Thanks to new contributor @elbee99 who has added support for Raman spectroscopy, - Simplified deployment procedure via Docker - Automated snapshot backups - ### What's changed? -* Add concept of user manager permissions by @ml-evs in https://github.com/the-grey-group/datalab/pull/417 -* Add UI for collections, fix local graphs and improve tables by @ml-evs in https://github.com/the-grey-group/datalab/pull/404 -* Adjust default echem subsampling by @ml-evs in https://github.com/the-grey-group/datalab/pull/426 -* Version bumps and linting tweaks by @ml-evs in https://github.com/the-grey-group/datalab/pull/429 -* Remote filesystem scanning improvements by @ml-evs in https://github.com/the-grey-group/datalab/pull/430 -* Implemented Raman block by @elbee99 in https://github.com/the-grey-group/datalab/pull/422 -* Move echem block to its own app submodule by @ml-evs in https://github.com/the-grey-group/datalab/pull/433 -* Switch from flake8+isort to ruff by @ml-evs in https://github.com/the-grey-group/datalab/pull/434 -* Update vue/cli to v5 by @ml-evs in https://github.com/the-grey-group/datalab/pull/432 -* Tweak to remote file system caching for improved page loads by @ml-evs in https://github.com/the-grey-group/datalab/pull/435 -* Enable Arbin res file parsing by adding mdbtools/0.7.1 build to server Dockerfile by @ml-evs in https://github.com/the-grey-group/datalab/pull/436 -* Better sanitize inputs for plot cycle selector by @ml-evs in https://github.com/the-grey-group/datalab/pull/438 -* Add sample/user/cell counters to deployment about page by @ml-evs in https://github.com/the-grey-group/datalab/pull/383 -* Fix last modified timezone and make value dynamic by @ml-evs in https://github.com/the-grey-group/datalab/pull/439 -* Restructure NMR block module and add tests by @ml-evs in https://github.com/the-grey-group/datalab/pull/441 -* Add basic permissions to files by @ml-evs in https://github.com/the-grey-group/datalab/pull/445 -* Fix broken README link and update affiliations by @ml-evs in https://github.com/the-grey-group/datalab/pull/448 -* Manual overhaul of API docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/451 -* Fix bug where user cannot be created with blank display name by @ml-evs in https://github.com/the-grey-group/datalab/pull/456 -* Bump navani and try to accomodate other deps by @ml-evs in https://github.com/the-grey-group/datalab/pull/457 -* Update INSTALL.md by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/458 -* Add subtitled intro video to README by @ml-evs in https://github.com/the-grey-group/datalab/pull/459 -* Bump @babel/traverse from 7.22.10 to 7.23.2 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/463 -* Bump apollo-server-core from 3.12.0 to 3.12.1 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/446 -* Bump tinymce from 5.10.7 to 5.10.8 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/465 -* Support .wdf files for 1D Raman by @elbee99 in https://github.com/the-grey-group/datalab/pull/466 -* Add more details to README by @ml-evs in https://github.com/the-grey-group/datalab/pull/479 -* Adding limits on file uploads by @ml-evs in https://github.com/the-grey-group/datalab/pull/475 -* Improve login/logout UI to support multiple authentication mechanisms by @ml-evs in https://github.com/the-grey-group/datalab/pull/384 -* Remove unecessary scope for GitHub OAuth by @ml-evs in https://github.com/the-grey-group/datalab/pull/483 -* Tweak to deployed documentation by @ml-evs in https://github.com/the-grey-group/datalab/pull/485 -* Revamp installation docs with additional configuration/administration/deployment info by @ml-evs in https://github.com/the-grey-group/datalab/pull/490 -* [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/the-grey-group/datalab/pull/493 -* Bump browserify-sign from 4.2.1 to 4.2.2 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/480 -* Rework e2e tests by @ml-evs in https://github.com/the-grey-group/datalab/pull/504 -* CI build optimisations by @ml-evs in https://github.com/the-grey-group/datalab/pull/497 -* Fix file permissions issues by @ml-evs in https://github.com/the-grey-group/datalab/pull/511 -* Labspec 1D Raman compatibility by @elbee99 in https://github.com/the-grey-group/datalab/pull/477 -* Make sure cypress cloud runs are recorded by @ml-evs in https://github.com/the-grey-group/datalab/pull/515 -* Clarify refcode prefix docs and config by @ml-evs in https://github.com/the-grey-group/datalab/pull/516 -* Add note about GitHub callback URL in docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/517 -* Bump to cypress 13 and remove flaky tests in CI by @ml-evs in https://github.com/the-grey-group/datalab/pull/519 -* Additionally e2e test Firefox & Chrome by default by @ml-evs in https://github.com/the-grey-group/datalab/pull/521 -* Improve GitHub OAuth connection by @ml-evs in https://github.com/the-grey-group/datalab/pull/523 -* Fix scope order for GitHub OAuth app by @ml-evs in https://github.com/the-grey-group/datalab/pull/525 -* Generate default `SECRET_KEY` from platform-specific info by @ml-evs in https://github.com/the-grey-group/datalab/pull/527 -* Make Flask session lifetime configurable by @ml-evs in https://github.com/the-grey-group/datalab/pull/526 -* Add ability to register and sign-in via email magic links by @ml-evs in https://github.com/the-grey-group/datalab/pull/484 -* Check and warn for missing secrets in server startup logs by @ml-evs in https://github.com/the-grey-group/datalab/pull/529 -* Miscellaneous tidying by @ml-evs in https://github.com/the-grey-group/datalab/pull/532 -* remove option to add a "Test Block" on the edit page by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/535 -* Promote `invoke` to a real dependency rather than dev dependency by @ml-evs in https://github.com/the-grey-group/datalab/pull/541 -* Fix `y_options` bug when plotting 1D Raman by @ml-evs in https://github.com/the-grey-group/datalab/pull/542 -* Native support for automatic backups by @ml-evs in https://github.com/the-grey-group/datalab/pull/467 -* Add rotating file log handler and simplify streamed log messages by @ml-evs in https://github.com/the-grey-group/datalab/pull/545 -* Update backup docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/544 -* Bump follow-redirects from 1.15.2 to 1.15.4 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/533 -* Bump tinymce from 5.10.8 to 5.10.9 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/508 -* Update galvani to 0.3.0 by @ml-evs in https://github.com/the-grey-group/datalab/pull/551 -* Pin `openai` to 0.28 until we can migrate by @ml-evs in https://github.com/the-grey-group/datalab/pull/555 -* Bump aiohttp from 3.9.1 to 3.9.2 in /pydatalab by @dependabot in https://github.com/the-grey-group/datalab/pull/559 -* Add UI for adding an existing item to an existing collection by @ml-evs in https://github.com/the-grey-group/datalab/pull/553 -* Bump navani to support ECLab >= 11.50 by @ml-evs in https://github.com/the-grey-group/datalab/pull/563 -* [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/the-grey-group/datalab/pull/564 -* Add spacing above logo by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/575 -* Tweaks and bugfixes for collection assignment UI, badge styles and navbar by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/566 -* Add drop shadow to badge hover by @ml-evs in https://github.com/the-grey-group/datalab/pull/579 -* Upgrade mdbtools per new galvani version by @ml-evs in https://github.com/the-grey-group/datalab/pull/581 -* Disable ORCID sign-in UI for now by @ml-evs in https://github.com/the-grey-group/datalab/pull/580 -* Prepare 0.3.0 release by @ml-evs in https://github.com/the-grey-group/datalab/pull/583 +- Add concept of user manager permissions by @ml-evs in https://github.com/the-grey-group/datalab/pull/417 +- Add UI for collections, fix local graphs and improve tables by @ml-evs in https://github.com/the-grey-group/datalab/pull/404 +- Adjust default echem subsampling by @ml-evs in https://github.com/the-grey-group/datalab/pull/426 +- Version bumps and linting tweaks by @ml-evs in https://github.com/the-grey-group/datalab/pull/429 +- Remote filesystem scanning improvements by @ml-evs in https://github.com/the-grey-group/datalab/pull/430 +- Implemented Raman block by @elbee99 in https://github.com/the-grey-group/datalab/pull/422 +- Move echem block to its own app submodule by @ml-evs in https://github.com/the-grey-group/datalab/pull/433 +- Switch from flake8+isort to ruff by @ml-evs in https://github.com/the-grey-group/datalab/pull/434 +- Update vue/cli to v5 by @ml-evs in https://github.com/the-grey-group/datalab/pull/432 +- Tweak to remote file system caching for improved page loads by @ml-evs in https://github.com/the-grey-group/datalab/pull/435 +- Enable Arbin res file parsing by adding mdbtools/0.7.1 build to server Dockerfile by @ml-evs in https://github.com/the-grey-group/datalab/pull/436 +- Better sanitize inputs for plot cycle selector by @ml-evs in https://github.com/the-grey-group/datalab/pull/438 +- Add sample/user/cell counters to deployment about page by @ml-evs in https://github.com/the-grey-group/datalab/pull/383 +- Fix last modified timezone and make value dynamic by @ml-evs in https://github.com/the-grey-group/datalab/pull/439 +- Restructure NMR block module and add tests by @ml-evs in https://github.com/the-grey-group/datalab/pull/441 +- Add basic permissions to files by @ml-evs in https://github.com/the-grey-group/datalab/pull/445 +- Fix broken README link and update affiliations by @ml-evs in https://github.com/the-grey-group/datalab/pull/448 +- Manual overhaul of API docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/451 +- Fix bug where user cannot be created with blank display name by @ml-evs in https://github.com/the-grey-group/datalab/pull/456 +- Bump navani and try to accomodate other deps by @ml-evs in https://github.com/the-grey-group/datalab/pull/457 +- Update INSTALL.md by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/458 +- Add subtitled intro video to README by @ml-evs in https://github.com/the-grey-group/datalab/pull/459 +- Bump @babel/traverse from 7.22.10 to 7.23.2 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/463 +- Bump apollo-server-core from 3.12.0 to 3.12.1 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/446 +- Bump tinymce from 5.10.7 to 5.10.8 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/465 +- Support .wdf files for 1D Raman by @elbee99 in https://github.com/the-grey-group/datalab/pull/466 +- Add more details to README by @ml-evs in https://github.com/the-grey-group/datalab/pull/479 +- Adding limits on file uploads by @ml-evs in https://github.com/the-grey-group/datalab/pull/475 +- Improve login/logout UI to support multiple authentication mechanisms by @ml-evs in https://github.com/the-grey-group/datalab/pull/384 +- Remove unecessary scope for GitHub OAuth by @ml-evs in https://github.com/the-grey-group/datalab/pull/483 +- Tweak to deployed documentation by @ml-evs in https://github.com/the-grey-group/datalab/pull/485 +- Revamp installation docs with additional configuration/administration/deployment info by @ml-evs in https://github.com/the-grey-group/datalab/pull/490 +- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/the-grey-group/datalab/pull/493 +- Bump browserify-sign from 4.2.1 to 4.2.2 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/480 +- Rework e2e tests by @ml-evs in https://github.com/the-grey-group/datalab/pull/504 +- CI build optimisations by @ml-evs in https://github.com/the-grey-group/datalab/pull/497 +- Fix file permissions issues by @ml-evs in https://github.com/the-grey-group/datalab/pull/511 +- Labspec 1D Raman compatibility by @elbee99 in https://github.com/the-grey-group/datalab/pull/477 +- Make sure cypress cloud runs are recorded by @ml-evs in https://github.com/the-grey-group/datalab/pull/515 +- Clarify refcode prefix docs and config by @ml-evs in https://github.com/the-grey-group/datalab/pull/516 +- Add note about GitHub callback URL in docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/517 +- Bump to cypress 13 and remove flaky tests in CI by @ml-evs in https://github.com/the-grey-group/datalab/pull/519 +- Additionally e2e test Firefox & Chrome by default by @ml-evs in https://github.com/the-grey-group/datalab/pull/521 +- Improve GitHub OAuth connection by @ml-evs in https://github.com/the-grey-group/datalab/pull/523 +- Fix scope order for GitHub OAuth app by @ml-evs in https://github.com/the-grey-group/datalab/pull/525 +- Generate default `SECRET_KEY` from platform-specific info by @ml-evs in https://github.com/the-grey-group/datalab/pull/527 +- Make Flask session lifetime configurable by @ml-evs in https://github.com/the-grey-group/datalab/pull/526 +- Add ability to register and sign-in via email magic links by @ml-evs in https://github.com/the-grey-group/datalab/pull/484 +- Check and warn for missing secrets in server startup logs by @ml-evs in https://github.com/the-grey-group/datalab/pull/529 +- Miscellaneous tidying by @ml-evs in https://github.com/the-grey-group/datalab/pull/532 +- remove option to add a "Test Block" on the edit page by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/535 +- Promote `invoke` to a real dependency rather than dev dependency by @ml-evs in https://github.com/the-grey-group/datalab/pull/541 +- Fix `y_options` bug when plotting 1D Raman by @ml-evs in https://github.com/the-grey-group/datalab/pull/542 +- Native support for automatic backups by @ml-evs in https://github.com/the-grey-group/datalab/pull/467 +- Add rotating file log handler and simplify streamed log messages by @ml-evs in https://github.com/the-grey-group/datalab/pull/545 +- Update backup docs by @ml-evs in https://github.com/the-grey-group/datalab/pull/544 +- Bump follow-redirects from 1.15.2 to 1.15.4 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/533 +- Bump tinymce from 5.10.8 to 5.10.9 in /webapp by @dependabot in https://github.com/the-grey-group/datalab/pull/508 +- Update galvani to 0.3.0 by @ml-evs in https://github.com/the-grey-group/datalab/pull/551 +- Pin `openai` to 0.28 until we can migrate by @ml-evs in https://github.com/the-grey-group/datalab/pull/555 +- Bump aiohttp from 3.9.1 to 3.9.2 in /pydatalab by @dependabot in https://github.com/the-grey-group/datalab/pull/559 +- Add UI for adding an existing item to an existing collection by @ml-evs in https://github.com/the-grey-group/datalab/pull/553 +- Bump navani to support ECLab >= 11.50 by @ml-evs in https://github.com/the-grey-group/datalab/pull/563 +- [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/the-grey-group/datalab/pull/564 +- Add spacing above logo by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/575 +- Tweaks and bugfixes for collection assignment UI, badge styles and navbar by @jdbocarsly in https://github.com/the-grey-group/datalab/pull/566 +- Add drop shadow to badge hover by @ml-evs in https://github.com/the-grey-group/datalab/pull/579 +- Upgrade mdbtools per new galvani version by @ml-evs in https://github.com/the-grey-group/datalab/pull/581 +- Disable ORCID sign-in UI for now by @ml-evs in https://github.com/the-grey-group/datalab/pull/580 +- Prepare 0.3.0 release by @ml-evs in https://github.com/the-grey-group/datalab/pull/583 ### New Contributors -* @elbee99 made their first contribution in https://github.com/the-grey-group/datalab/pull/422 -* @pre-commit-ci made their first contribution in https://github.com/the-grey-group/datalab/pull/493 + +- @elbee99 made their first contribution in https://github.com/the-grey-group/datalab/pull/422 +- @pre-commit-ci made their first contribution in https://github.com/the-grey-group/datalab/pull/493 **Full Changelog**: https://github.com/the-grey-group/datalab/compare/v0.2.5...v0.3.0 diff --git a/docker-compose.yml b/docker-compose.yml index d227addd3..0f53e0472 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -9,14 +9,14 @@ services: - ./logs:/logs restart: unless-stopped environment: - - VUE_APP_GIT_VERSION - - VUE_APP_API_URL - - VUE_APP_LOGO_URL - - VUE_APP_HOMEPAGE_URL - - VUE_APP_EDITABLE_INVENTORY - - VUE_APP_WEBSITE_TITLE - - VUE_APP_QR_CODE_RESOLVER_URL - - VUE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT + - VITE_APP_GIT_VERSION + - VITE_APP_API_URL + - VITE_APP_LOGO_URL + - VITE_APP_HOMEPAGE_URL + - VITE_APP_EDITABLE_INVENTORY + - VITE_APP_WEBSITE_TITLE + - VITE_APP_QR_CODE_RESOLVER_URL + - VITE_APP_AUTOMATICALLY_GENERATE_ID_DEFAULT ports: - "8081:8081" diff --git a/webapp/.browserslistrc b/webapp/.browserslistrc deleted file mode 100644 index 214388fe4..000000000 --- a/webapp/.browserslistrc +++ /dev/null @@ -1,3 +0,0 @@ -> 1% -last 2 versions -not dead diff --git a/webapp/.env.test_e2e b/webapp/.env.test_e2e index 1ef7c3ba0..456f63beb 100644 --- a/webapp/.env.test_e2e +++ b/webapp/.env.test_e2e @@ -1,2 +1,2 @@ NODE_ENV=production -VUE_APP_API_URL="http://localhost:5001" +VITE_APP_API_URL="http://localhost:5001" diff --git a/webapp/.eslintrc.js b/webapp/.eslintrc.cjs similarity index 100% rename from webapp/.eslintrc.js rename to webapp/.eslintrc.cjs diff --git a/webapp/babel.config.js b/webapp/babel.config.js deleted file mode 100644 index 184046416..000000000 --- a/webapp/babel.config.js +++ /dev/null @@ -1,16 +0,0 @@ -module.exports = function override(api) { - var env = api.cache(() => process.env.NODE_ENV); - var isProd = api.cache(() => env === "production"); - let config = {}; - - if (isProd) { - config["plugins"] = [ - "@babel/plugin-transform-export-namespace-from", - "transform-remove-console", - ]; - } else { - config["plugins"] = ["@babel/plugin-transform-export-namespace-from"]; - } - config["presets"] = ["@vue/cli-plugin-babel/preset"]; - return config; -}; diff --git a/webapp/cypress.config.ts b/webapp/cypress.config.ts index df6c1c395..6b65ab015 100644 --- a/webapp/cypress.config.ts +++ b/webapp/cypress.config.ts @@ -9,8 +9,8 @@ export default defineConfig({ }, component: { devServer: { - framework: "vue-cli", - bundler: "webpack", + framework: "vue", + bundler: "vite", }, }, }); diff --git a/webapp/cypress/component/UserBubbleLoginTest.cy.jsx b/webapp/cypress/component/UserBubbleLoginTest.cy.jsx index ee174389c..e695cfefe 100644 --- a/webapp/cypress/component/UserBubbleLoginTest.cy.jsx +++ b/webapp/cypress/component/UserBubbleLoginTest.cy.jsx @@ -1,10 +1,10 @@ import { createStore } from "vuex"; import UserBubbleLogin from "@/components/UserBubbleLogin.vue"; import NotificationDot from "@/components/NotificationDot.vue"; -import crypto from "crypto"; +import MD5 from "crypto-js/md5"; describe("UserBubbleLogin", () => { - const md5 = (value) => crypto.createHash("md5").update(value).digest("hex"); + const md5 = (value) => MD5(value).toString(); const creator = { contact_email: "test@contact.email", diff --git a/webapp/cypress/component/UserBubbleTest.cy.jsx b/webapp/cypress/component/UserBubbleTest.cy.jsx index 5de44e90a..c2eb1364a 100644 --- a/webapp/cypress/component/UserBubbleTest.cy.jsx +++ b/webapp/cypress/component/UserBubbleTest.cy.jsx @@ -1,8 +1,8 @@ import UserBubble from "@/components/UserBubble.vue"; -import crypto from "crypto"; +import MD5 from "crypto-js/md5"; describe("UserBubble", () => { - const md5 = (value) => crypto.createHash("md5").update(value).digest("hex"); + const md5 = (value) => MD5(value).toString(); const creator = { contact_email: "test@contact.email", diff --git a/webapp/public/index.html b/webapp/index.html similarity index 58% rename from webapp/public/index.html rename to webapp/index.html index 527cc131b..ef8a96153 100644 --- a/webapp/public/index.html +++ b/webapp/index.html @@ -1,11 +1,14 @@ - + - - <%= htmlWebpackPlugin.options.title %> + + Default Title + + + diff --git a/webapp/package.json b/webapp/package.json index 254b537a0..124b09bb6 100644 --- a/webapp/package.json +++ b/webapp/package.json @@ -3,76 +3,59 @@ "version": "0.0.0-git", "private": true, "scripts": { - "serve": "VUE_APP_GIT_VERSION=$(node scripts/get-version.js) vue-cli-service serve", - "build": "VUE_APP_GIT_VERSION=$(node scripts/get-version.js) vue-cli-service build", - "test:unit": "vue-cli-service test:unit", - "test:e2e": "vue-cli-service test:e2e --mode test_e2e", - "lint": "vue-cli-service lint" + "dev": "vite", + "build": "vite build", + "preview": "vite preview" }, "dependencies": { - "@fortawesome/fontawesome-svg-core": "^1.2.26-2", - "@fortawesome/free-brands-svg-icons": "^5.15.4", - "@fortawesome/free-regular-svg-icons": "^5.15.2", - "@fortawesome/free-solid-svg-icons": "^5.12.0-2", - "@fortawesome/vue-fontawesome": "^3.0.0-3", + "@bokeh/bokehjs": "^2.4.0", + "@fortawesome/fontawesome-svg-core": "^6.7.1", + "@fortawesome/free-brands-svg-icons": "^6.7.1", + "@fortawesome/free-regular-svg-icons": "^6.7.1", + "@fortawesome/free-solid-svg-icons": "^6.7.1", + "@fortawesome/vue-fontawesome": "^3.0.8", "@popperjs/core": "^2.11.8", - "@primevue/themes": "^4.0.0", - "@tinymce/tinymce-vue": "^4.0.0", - "@uppy/core": "^1.16.0", - "@uppy/dashboard": "^1.16.0", - "@uppy/webcam": "^1.8.4", - "@uppy/xhr-upload": "^1.6.10", - "@vueuse/components": "^10.7.2", - "bootstrap": "^4.5.3", + "@primevue/themes": "^4.2.4", + "@tinymce/tinymce-vue": "^6.1.0", + "@uppy/core": "^4.2.3", + "@uppy/dashboard": "^4.1.2", + "@uppy/webcam": "^4.0.2", + "@uppy/xhr-upload": "^4.2.2", + "@vueuse/components": "^12.0.0", + "add": "^2.0.6", + "bootstrap": "4.5.3", "buffer": "^6.0.3", - "crypto-browserify": "^3.12.0", - "cytoscape": "^3.23.0", + "crypto-js": "^4.2.0", + "cypress": "^13.16.0", + "cytoscape": "^3.30.4", "cytoscape-cola": "^2.5.1", - "cytoscape-elk": "^2.1.0", + "cytoscape-elk": "^2.3.0", "cytoscape-euler": "^1.2.3", "cytoscape-fcose": "^2.2.0", - "date-fns": "^2.29.3", - "highlight.js": "^11.7.0", - "markdown-it": "^13.0.1", - "mermaid": "^10.1.0", + "date-fns": "^4.1.0", + "highlight.js": "^11.10.0", + "markdown-it": "^14.1.0", + "mermaid": "^11.4.1", "primeicons": "^7.0.0", - "primevue": "^4.0.0", + "primevue": "^4.2.4", "process": "^0.11.10", - "qrcode-vue3": "^1.6.8", - "serve": "^14.2.1", + "qrcode-vue3": "^1.7.1", + "redis": "^4.7.0", + "serve": "^14.2.4", "stream-browserify": "^3.0.0", - "tinymce": "^5.10.9", - "vue": "^3.2.4", - "vue-qrcode-reader": "^5.5.7", - "vue-router": "^4.0.0-0", + "tinymce": "5", + "vue": "^3.5.13", + "vue-qrcode-reader": "^5.5.11", + "vue-router": "^4.5.0", "vue-select": "^4.0.0-beta.6", - "vue3-easy-data-table": "^1.5.45", - "vuex": "^4.0.0-0" + "vuex": "^4.1.0", + "yarn": "^1.22.22" }, "devDependencies": { - "@babel/core": "^7.24.8", - "@babel/eslint-parser": "^7.24.8", - "@babel/plugin-transform-export-namespace-from": "^7.24.7", - "@testing-library/cypress": "^10.0.0", - "@testing-library/vue": "^8.0.3", - "@vue/cli-plugin-babel": "~5.0.8", - "@vue/cli-plugin-e2e-cypress": "5.0.8", - "@vue/cli-plugin-eslint": "~5.0.8", - "@vue/cli-plugin-router": "~5.0.8", - "@vue/cli-plugin-vuex": "~5.0.8", - "@vue/cli-service": "~5.0.8", - "@vue/compiler-sfc": "^3.2.4", - "@vue/eslint-config-prettier": "^8.0.0", - "@vue/test-utils": "^2.4.5", - "babel-plugin-transform-remove-console": "^6.9.4", - "cypress": "^13.7.2", - "eslint": "^8.56.0", - "eslint-config-prettier": "^8.10.0", - "eslint-plugin-cypress": "^3.3.0", - "eslint-plugin-prettier": "^5.1.3", - "eslint-plugin-vue": "^8.0.3", - "prettier": "^3.1.0", - "typescript": "~3.9.3", - "web-worker": "^1.2.0" + "@types/node": "^22.10.1", + "@vitejs/plugin-vue": "^5.2.1", + "typescript": "^5.7.2", + "vite": "^6.0.3", + "vite-plugin-node-polyfills": "^0.22.0" } } diff --git a/webapp/scripts/get-version.js b/webapp/scripts/get-version.js index b1749f995..6618e98e2 100755 --- a/webapp/scripts/get-version.js +++ b/webapp/scripts/get-version.js @@ -1,12 +1,12 @@ #!/usr/bin/env node // This script tries to get the version of the app from three sources: // -// 1. The VUE_APP_GIT_VERSION environment variable +// 1. The VITE_APP_GIT_VERSION environment variable // 2. The latest git tag // 3. The version field in package.JSON // // It can be used as part of the build system to set the -// `VUE_APP_GIT_VERSION` environment variable itself. +// `VITE_APP_GIT_VERSION` environment variable itself. const { execSync } = require("child_process"); const fs = require("fs"); @@ -32,9 +32,9 @@ function getGitVersion() { } function getVersion() { - // Check if VUE_APP_GIT_VERSION is already set (e.g., by build system) - if (process.env.VUE_APP_GIT_VERSION) { - return process.env.VUE_APP_GIT_VERSION; + // Check if VITE_APP_GIT_VERSION is already set (e.g., by build system) + if (process.env.VITE_APP_GIT_VERSION) { + return process.env.VITE_APP_GIT_VERSION; } // Try to get git version diff --git a/webapp/src/App.vue b/webapp/src/App.vue index 7a3b20643..ac6e4308d 100644 --- a/webapp/src/App.vue +++ b/webapp/src/App.vue @@ -3,6 +3,9 @@