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The latest version of SMAPdigger has been moved to
https://github.com/hellbelly/SMAPdigger
Several bugs have been fixed and the architecture has been improved in the latest version.
smapDigger works on 64-bit Unix (Linux, Ubuntu, Mac OS, etc) based systems.
Hardware requirements
At least one computing node equipped with at least 10 GB Memory
Software requirements
GCC 4.6.0 or higher
Perl 5.16.3 or higher
Java 1.6.0 or higher
zlib 1.2.8 or higher
- cd [smapDigger root directory]
- Execute command "chmod -R 755 ./"
- Execute command "./Software_Setup.sh"
1, modify configuration file configure
2, Execute script "perl ./Monitor.pl -c configure -o [Output path]"
1, cd [Output path]
sh RRBS_Run.sh