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README.md

dashr phylogeny

About this app:

Using the demo

This demo lets you interactively explore the phylogeny and spread of selected diseases. Select a disease from the "Dataset" dropdown, and the date range you want from the "Data Range" slider, and it will display:

  • A line plot of the number of cases per country, per year
  • The phylogenetic tree of the disease
  • A map showing the number of cases per country
  • A histogram of the distribution of cases by country

screenshot

Running the app locally

Clone the git repo

git clone https://github.com/plotly/dash-sample-apps
cd dash-sample-apps/apps/dashr-phylogeny

Install the requirements. From the terminal, run the following to install the required packages in the default location:

R -e "install.packages(c('ape'))"

Run the app. From the terminal, run:

Rscript app.R

Open a browser at http://127.0.0.1:8050