A curated list of awesome R packages, frameworks and software.

R toolkit for single cell genomics

Easily install and load packages from the tidyverse

🦄 Scientific journal and sci-fi themed color palettes for ggplot2

Inferring CNV from Single-Cell RNA-Seq

Fast, sensitive and accurate integration of single-cell data with Harmony

Survival Analysis and Visualization

R package for performing 2-sample MR using MR-Base database

Survival package for R

High dimensional weighted gene co-expression network analysis

Regression Modeling Strategies

Development repository for the Bioconductor package 'mixOmics '

An implement R package to visualize GSEA results

Multi-Omics integration and VIsualization in Cancer Subtyping

Make TCGA download and prepare easy!

Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal cancer

R package for Pathway RespOnsive GENe activity inference

Machine learning-based integration model with elegant performance

plots function for array

The bridge between the NCBI Gene Expression Omnibus and Bioconductor

A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were pr…

The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient color volcano plot(`gradual_volcano`) and GO term volcano pl…

R package autoReg

Mosaic single cell data integration using non-overlapping features

LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment

Pipeline that runs two-sample Mendelian randomization on molecular QTLs and GWAS loci and tests for horizontal pleiotropy.