Skip to content

Commit a3ff9e1

Browse files
Update README.md
1 parent f760234 commit a3ff9e1

File tree

1 file changed

+2
-2
lines changed

1 file changed

+2
-2
lines changed

README.md

+2-2
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
# **BiomedParse**
22
This is the official repository for "A foundation model for joint segmentation, detection and recognition of biomedical objects across nine modalities"
33

4-
[[`Paper`](https://arxiv.org/abs/2405.12971)] [[`Demo`](https://microsoft.github.io/BiomedParse/)] [[`Model`](https://huggingface.co/microsoft/BiomedParse)] [[`Data`](https://huggingface.co/datasets/microsoft/BiomedParseData)]
4+
[[`Paper`](https://aka.ms/biomedparse-paper)] [[`Demo`](https://microsoft.github.io/BiomedParse/)] [[`Model`](https://huggingface.co/microsoft/BiomedParse)] [[`Data`](https://huggingface.co/datasets/microsoft/BiomedParseData)]
55

66
## Installation
77
```sh
@@ -36,7 +36,7 @@ pip install -r assets/requirements/requirements.txt
3636
BiomedParseData was created from preprocessing publicly available biomedical image segmentation datasets. Check a subset of our processed datasets on HuggingFace: https://huggingface.co/datasets/microsoft/BiomedParseData. For the source datasets, please check the details here: [BiomedParseData](assets/readmes/DATASET.md). As a quick start, we've samples a tiny demo dataset at biomedparse_datasets/BiomedParseData-Demo
3737

3838
## Model Checkpoints
39-
We host our model checkpoints on HuggingFace here: https://huggingface.co/microsoft/BiomedParse. Please expect future updates of the model as we are making it more robust and powerful based on feedbacks from the community. We recomment using the latest version of the model. Please put the model in the pretrained folder when runing the code.
39+
We host our model checkpoints on HuggingFace here: https://huggingface.co/microsoft/BiomedParse. Please download and put the model in the pretrained folder when runing the code. Expect future updates of the model as we are making it more robust and powerful based on feedbacks from the community. We recomment using the latest version of the model.
4040

4141
## Finetune on Your Own Data
4242
While BiomedParse can take in arbitrary image and text prompt, it can only reasonably segment the targets that it has learned during pretraining! If you have a specific segmentation task that the latest checkpint doesn't do well, here is the instruction on how to finetune it on your own data.

0 commit comments

Comments
 (0)