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Commits on Sep 2, 2024

• Merge pull request AstraZeneca#51 from AstraZeneca/releases/v2.1.1

  Show description for 4d36786
  RichJackson

  authored
  4d36786

Commits on Jul 8, 2024

• Bump version: 2.1.0 → 2.1.1

  

  Kazu Version Bump

  committed
  9f9741f

• updated release command to public pypi

  RichJackson

  committed
  cf3557b

• entity class config for chembl is now hard coded to 'drug' as it may be necessary to use this autocurator when the CHEMBL parser isn't loaded (e.g in OT_MOLECULE)

  RichJackson

  committed
  c499827

• fixed a bug where upgrading a resource won't work if there's no downloader configured

  RichJackson

  committed
  b97ee04

• _convert_=all required in hydra instantiation due to third party libraries not respecting list like types

  RichJackson

  committed
  e06202d

• build_and_test_model_packs.py will now throw an assertion error if multiple packs are built with debug mode on

  RichJackson

  committed
  696c3b5

• fixed bug in model pack build where build config acceptance test param was not respected

  RichJackson

  committed
  ad8961d

• minor curation adjustments

  RichJackson

  committed
  209e7f6

Commits on Jul 4, 2024

• Merge pull request AstraZeneca#48 from AstraZeneca/releases/v2.1.0

  Show description for 9fd7b09
  RichJackson

  authored
  9fd7b09

• Bump version: 2.0.0 → 2.1.0

  

  Kazu Version Bump

  committed
  2aa260c

• fixed commit index in test_discrepancy_manager_sync

  RichJackson

  committed
  b2ba17a

• town crier KRT

  RichJackson

  committed
  7458b4b

• strict mode on conflict analyser: if True, then the function will return True if there

  Show description for b366af5
  RichJackson

  committed
  b366af5

• changed log message to ref KRT

  RichJackson

  committed
  f311a75

• stopped reading resources directly from curations path in resource manager init as this was causing bugs with normalisation issues. Instead we rely on the report directly

  RichJackson

  committed
  b19354e

• fixed indent which would cause lack of merge report to bug

  RichJackson

  committed
  10fb3b4

• clear resource mananger cache ofter ont update as it will be invalid at that point

  RichJackson

  committed
  4b9d4fd

• using parser.download_ontology rather than calling the downloader directly, as this also handles deletion

  RichJackson

  committed
  8abe820

• removed superfluous delete function for ChemblParquetOntologyDownloader as it now outputs a single parquet file

  RichJackson

  committed
  4150aee

• using new method name

  RichJackson

  committed
  3ee0fd8

• renamed method as it was confusing. also added comment to explain why target is popped

  RichJackson

  committed
  2675561

• using get_selected_parser_name method where appropriate

  RichJackson

  committed
  863357e

• update uberon data origin

  RichJackson

  committed
  4f2f755

• update OT versions for molecule and measurement

  RichJackson

  committed
  b88bd04

• minor doc improvements

  RichJackson

  committed
  f854d8f

• added clear_invalid_caches, which triggers when save is activated, so that the cache will repopulate correctly on reload

  RichJackson

  committed
  58a264b

• string editor uses strict mode on check_for_case_conflicts_across_resources

  RichJackson

  committed
  2784396

• added strict mode to find_case_conflicts, so that all potential string conflicts may be detected

  RichJackson

  committed
  259a1a6

• added simple pipeline testing interface

  RichJackson

  committed
  4886124

• resource manager is now aware of any actions that can invalidate the parser caches. Also added methods to load an instance of the pipeline in a cache aware fashion

  RichJackson

  committed
  ffa6d84

• moved load_config to a location to avoid circular imports

  RichJackson

  committed
  b847eaf

• update configuration for kazu 2.1.0 release

  RichJackson

  committed
  1759125

• update resources for kazu 2.1.0 release. This includes removing chembl in favour of the new parquet format

  Show description for 756dff7
  RichJackson

  committed
  756dff7

• reordered pages in krt for a more natural workflow selection

  RichJackson

  committed
  803ec87

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