Skip to content

Latest commit

 

History

History
93 lines (60 loc) · 3.83 KB

data-sync.md

File metadata and controls

93 lines (60 loc) · 3.83 KB
Raw

Sync Resources from Another FHIR Server to Blaze

Using Subscriptions

If you want to facilitate the CQL engine or other features of Blaze, but you can't or don't like to use Blaze as your primary FHIR server, you can configure your primary FHIR server to automatically sync every change to Blaze by using the subscription mechanism.

In this example we use HAPI as our primary FHIR server. In the docs/data-sync directory, you can find a Docker Compose file with a setup of a HAPI and a Blaze server. Please start the containers by running:

docker-compose -f docs/data-sync/subscription/docker-compose.yml up

After both servers are up and running, you can create two subscriptions, one for Patient resources and one for Observations. Please run:

curl -H 'Content-Type: application/fhir+json' -d @subscription-bundle.json http://localhost:8090/fhir

After you created the subscriptions, you can import or change data on the HAPI server, and it will be synced automatically to the Blaze server.

Because the subscription mechanism doesn't send the resources in the right order to satisfy referential integrity, Blaze is started with ENFORCE_REFERENTIAL_INTEGRITY set to false.

Create a Full Clone of a Blaze Server

Another use-case would be to copy all data from one Blaze server to another. That can be useful to either:

  • remove the history from a Blaze server,
  • create a snapshot of all resources,
  • migrate from Blaze to another FHIR server or the other way around.

Setup Test Environment

In order to test copying all data from one Blaze server to another, start the following Docker Compose project:

docker-compose -f docs/data-sync/copy/docker-compose.yml up

You should see a src server started at port 8080 and a dst server started at port 8082.

Load Data into the Source Server

Next, load some data into the source server:

blazectl upload --server http://localhost:8080/fhir .github/test-data/synthea

After that finishes, you can use blazectl count-resources to ensure that the source server has data and the destination server hasn't:

blazectl count-resources --server http://localhost:8080/fhir
blazectl count-resources --server http://localhost:8082/fhir

Copy All Resources from Source to Destination

The copy-data.sh script uses GNU Parallel. You may have to install that first.

scripts/copy-data.sh http://localhost:8080/fhir http://localhost:8082/fhir

The script outputs Successfully send transaction bundle for each transaction bundle send to the destination server.

You can use blazectl count-resources to see whether the resource counts of the destination server equals the resource counts of the source server:

blazectl count-resources --server http://localhost:8080/fhir
blazectl count-resources --server http://localhost:8082/fhir

You can also compare the resource contents between the source and the destination server by downloading all resources (of a type), removing the Meta.versionId and Meta.lastUpdated values that will be different on the destination server:

blazectl download --server http://localhost:8080/fhir Patient | jq -c 'del(.meta.versionId) | del(.meta.lastUpdated)' > src-patients.ndjson 
blazectl download --server http://localhost:8082/fhir Patient | jq -c 'del(.meta.versionId) | del(.meta.lastUpdated)' > dst-patients.ndjson 
diff src-patients.ndjson dst-patients.ndjson

Save All Resources from the Source Server

If you don't like to copy the data into the destination server immediately, you can also save the transaction bundles on disk and use blazectl upload later to upload them to the destination server.

mkdir dst
scripts/save-data.sh http://localhost:8080/fhir dst