Skip to content

Pull requests: scverse/scanpy

New pull request New
Clear current search query, filters, and sorts
73 Open 1,515 Closed
73 Open 1,515 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Backport PR #3367 on branch 1.10.x (Constrain all extras for min-deps job) Development Process 🚀
#3399 opened Dec 12, 2024 by meeseeksmachine Loading… 1.10.5
1
(feat): elem_mul 64 bit upcast option
#3392 opened Dec 5, 2024 by ilan-gold Loading…
2 of 3 tasks
1.11.0
1
3
A memory efficient implementation of the .mtx reading function Area – Performance 🐌
#3389 opened Nov 28, 2024 by gjeuken Loading…
2 of 3 tasks
@Intron7
1
Switch to session-info2
#3384 opened Nov 22, 2024 by flying-sheep Loading…
1 of 3 tasks
1.11.0
1
1
remove out of core median
#3379 opened Nov 21, 2024 by Intron7 Loading… 1.11.0
2
faster reading of h5ad file (~18X faster)
#3365 opened Nov 14, 2024 by kaushalprasadhial • Draft
3 tasks
1
Create cat regressor benchmark
#3353 opened Nov 11, 2024 by Intron7 Loading… 1.11.0
31
Simplify scale Area – Performance 🐌 benchmark
#3351 opened Nov 11, 2024 by flying-sheep • Draft 1.11.0
2
(feat): seurat v3 with dask Area - Out of core 💾 Working with on disk data Area – Performance 🐌 Area – Preprocessing 🧼
#3340 opened Nov 5, 2024 by ilan-gold • Draft
2 of 3 tasks
1.11.0
1
1
~ 35.63% faster filtering
#3330 opened Oct 29, 2024 by kaushalprasadhial • Draft
3 tasks
1
Benchmark dask benchmark
#3319 opened Oct 24, 2024 by mikelkou Loading…
1
@mikelkou
2
fix bug for partial_fit when the number of batch samples is less than n_comp
#3313 opened Oct 23, 2024 by DingWB Loading…
2 of 3 tasks
lets umap run in parallel
#3295 opened Oct 18, 2024 by Intron7 Loading…
1
21
Update pyproject.toml
#3281 opened Oct 14, 2024 by Intron7 • Draft
1
scale function(_get_mean_var) updated for dense array, speedup upto ~4.65x
#3280 opened Oct 11, 2024 by kaushalprasadhial Loading…
@Intron7 @mikelkou
13
t-SNE optimization using scikit-learn-intelex
#3279 opened Oct 11, 2024 by kaushalprasadhial Loading…
2
Extending gex_only option to Visium function
#3278 opened Oct 11, 2024 by alexanderchang1 Loading…
3 tasks done
1
1
Add sanitize to score_genes
#3262 opened Sep 26, 2024 by flying-sheep • Draft
3 tasks
1
Less hacky plotting classes
#3209 opened Aug 13, 2024 by flying-sheep • Draft
9
Switch dendrogram implementation to aggregate
#3204 opened Aug 9, 2024 by flying-sheep • Draft
2 of 3 tasks
1
1
add layer argument for sc.tl.score_genes_cell_cycle
#3138 opened Jul 2, 2024 by shinthor • Draft
1 of 3 tasks
1.11.0
2
Add str as a valid option for the save argument in scanpy.pl.rank_genes_groups
#3076 opened May 22, 2024 by JoshLoecker Loading…
1
Update ingest example. Fixes AttributeError: 'Ingest' object has no attribute '_pca_use_hvg'
#3075 opened May 22, 2024 by siebrenf Loading…
3 tasks done
1
2
t-SNE optimization using scikit-learn-intelex
#3061 opened May 14, 2024 by ashish615 Loading…
14
✨ Add colorblocks to baseplot similar to heatmap Area - Plotting 🌺
#3043 opened May 2, 2024 by mbuttner Loading…
2 tasks done
1
ProTip! What’s not been updated in a month: updated:<2024-11-14.