Quantification of transposable element expression using RNA-seq

TEspeX - pipeline for Transposable Elements expression quantification

Transposable Element Finder - Detection of active transposable elements from NGS data

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

Meta-pipeline to identify transposable element insertions using next generation sequencing data

Software for detecting transposable element insertions from next-generation sequencing data