diff --git a/README.md b/README.md index b1a1dc7..c4e2872 100644 --- a/README.md +++ b/README.md @@ -3,3 +3,24 @@ #### Macrophage Annotation of Gene Network Enrichment Tool #### Available at https://magnet-winterlab.herokuapp.com + + +Characterization of gene lists obtained from high-throughput genomic experiments is an essential task +to uncover the underlying biological insights. A common strategy is to perform enrichment analyses +that utilize standardized biological annotations, such as GO and KEGG pathways, which attempt to +encompass all domains of biology. However, this approach provides generalized, static results that +may fail to capture subtleties associated with research questions within a specific domain. Thus, there +is a need for an application that can provide precise, relevant results by leveraging the latest research. +We have therefore developed an interactive web application, Macrophage Annotation of Gene Network +Enrichment Tool or MAGNET, for performing enrichment analyses on gene sets that are specifically +relevant to macrophages. Using the hypergeometric distribution, MAGNET assesses the significance +of overlapping genes with annotations from recent macrophage studies, that were curated from +published manuscripts and data repositories. We implemented numerous features that enhance utility +and user-friendliness, such as the simultaneous testing of multiple gene sets, different visualization +options, option to upload custom datasets, and downloadable outputs. Here, we use two example +studies compared against our current database of seven publications on mouse macrophages to +demonstrate that MAGNET provides relevant and unique results that complement well with +conventional enrichment analysis tools. Although specific to macrophage datasets, we envision +MAGNET will catalyze developments of similar applications in other domains of interest. + +![image](https://user-images.githubusercontent.com/20377476/164351179-a7b7eeab-716b-44f3-8ed4-8394e4dbef05.png)