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Commits on Nov 7, 2022

• Update release notes

  saketkc

  committed
  873e37c

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• Update sct FindMarkers tests

  timoast

  committed
  3cfa5a4

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• Use mean.fxn for FindMarkers.SCTAssay

  saketkc

  committed
  8f98270

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• Fix FindMarkers.SCTAssay tests

  saketkc

  committed
  ef1fc1e

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Commits on Nov 5, 2022

• Fix FindMarkers for SCT

  saketkc

  committed
  20db789

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Commits on Nov 4, 2022

• Set norm.method to LogNormalize for FindMarkers.SCTAssay to ensure expm1()

  saketkc

  committed
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Commits on Oct 25, 2022

• Replace {spatstat.core} with {spatstat.explore}

  mojaveazure

  committed
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Commits on Oct 21, 2022

• Merge pull request satijalab#6518 from satijalab/fix/DimPlot

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  mojaveazure

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Commits on Oct 11, 2022

• Fixed loading multiple outs, and load controls into separate assays

  jsicherman

  committed
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Commits on Oct 7, 2022

• Optional loading, and data.table

  jsicherman

  committed
  c116812

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• Check cells.highlight is not dataframe; satijalab#6505

  timoast

  committed
  f42a33f

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• bump seurat object version

  AustinHartman

  committed
  673b122

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Commits on Sep 29, 2022

• fix merge conflicts

  AustinHartman

  committed
  356b3b8

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Commits on Sep 27, 2022

• update min SeuratObject version

  AustinHartman

  committed
  6c7410f

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Commits on Sep 26, 2022

• ImageFeaturePlot fix

  AustinHartman

  committed
  d177124

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• Merge pull request satijalab#6467 from satijalab/release/4.2.0

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  mojaveazure

  authored
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Commits on Sep 21, 2022

• update changelog

  AustinHartman

  committed
  3d26669

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• 4.2.0

  AustinHartman

  committed
  fc285f5

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• Merge pull request satijalab#658 from satijalab/checkmatrix

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  AustinHartman

  authored
  c53699b

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• Merge pull request satijalab#650 from satijalab/feat/foldchange

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  AustinHartman

  authored
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Commits on Sep 20, 2022

• Add back check.matrix

  timoast

  committed
  ef07a34

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• Increase dev version;

  timoast

  committed
  144421c

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• Ensure cells are character vector

  timoast

  committed
  c4a5fd3

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Commits on Sep 15, 2022

• require 4.1.1

  pmarks

  committed
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Commits on Sep 14, 2022

• wip

  pmarks

  committed
  6caa7b8

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• first cut of Xenium loader

  pmarks

  committed
  967f2bc

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Commits on Sep 2, 2022

• Update docs

  timoast

  committed
  731ec7c

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• Add more tests for FindMarkers

  timoast

  committed
  015844d

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• Remove pseudocount.use from Seurat method:

  timoast

  committed
  1bf7bba

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• Tweaks for pseudocount.use and normalization methods for FindMarkers and

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  mojaveazure

  committed
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Commits on Sep 1, 2022

• Merge pull request satijalab#649 from satijalab/foldchange

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  AustinHartman

  authored
  69fc8a9

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• set pseudocount.use to null at seurat level

  AustinHartman

  committed
  dbe7ff3

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Commits on Aug 31, 2022

• fix merge conflict

  AustinHartman

  committed
  f850d21

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• Merge pull request satijalab#647 from satijalab/fix-matrix

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  AustinHartman

  authored
  7d44483

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Commits on Aug 29, 2022

• fix merge conflicts

  AustinHartman

  committed
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