Lib.rs

› Search #bioinformatics #bio #genomics #sam #rna-seq #fasta #noodles #plot

  1. rust-htslib

    HTSlib bindings and a high level Rust API for reading and writing BAM files

    v1.0.0 8.8K #bam #sequencing #bioinformatics #pileup

  2. noodles

    Bioinformatics I/O libraries

    v0.105.0 17K #bioinformatics #bam #sam #bio

  3. oarfish

    A fast, accurate and versatile tool for long-read transcript quantification

    v0.9.2 #rna-seq #long-read #quantification #transcriptomics

  4. ugv

    Ultra-fast genome viewer for interactive exploration of genomic data

    v0.1.2 #genomics #bam #bioinformatics #viewer #fasta

  5. alignoth

    creating alignment plots from bam files

    v1.4.6 #plot #vega-lite #html #alignment #stdout #bam-file #wizard #visualized

  6. rust-bio-tools

    A set of fast and robust command line utilities for bioinformatics tasks based on Rust-Bio

    v0.42.2 4.1K #bioinformatics #genomics #bam #fastq #rust-bio #fuzzy-matching #csv #html-reports #bcf #plot

  7. modtector

    A high-performance modification detection tool in Rust

    v0.15.4 #bioinformatics #rna #detect #htslib #modification

  8. noodles-vcf

    Variant Call Format (VCF) reader and writer

    v0.84.0 61K #variant-call-format #bioinformatics #bio

  9. fgumi

    High-performance tools for UMI-tagged sequencing data: extraction, grouping, and consensus calling

    v0.1.0 #bioinformatics #umi #sequencing #consensus #ngs

  10. noodles-tabix

    Tabix (TBI) format reader and writer

    v0.60.0 66K #bioinformatics #genomics #noodles #bio

  11. ref-solver

    Solve reference genome identification from BAM/SAM headers

    v0.1.0 #genomics #sam #bam #bioinformatics #reference-genome

  12. noodles-sam

    Sequence Alignment/Map (SAM) format reader and writer

    v0.82.0 6.6K #sam #sequence-alignment #bioinformatics #bio

  13. nanalogue

    BAM/Mod BAM parsing and analysis tool with a single-molecule focus

    v0.1.2 #rna #dna-rna #dna #bio #modbam #dna-methylation #bam

  14. d4-hts

    The htslib binding used by D4

    v0.3.9 1.0K #d4-format #genomics #storage-compression #htslib #statistics #cram #bam-file #disk-space #data-access #genomics-data

  15. rust-featurecounts

    A fast feature counting tool for prokaryotic RNA-seq analysis, compatible with featureCounts

    v0.1.0 #genomics #bioinformatics #rna-seq #prokaryote

  16. mm2

    minimap2 frontend

    v0.25.6 4.2K #query #minimap2 #alignment #front-end #target #samtools #fa

  17. htsgetr

    htsget protocol server implementation in Rust

    v0.1.6 #htsget #genomics #jwt #bam #fasta #bearer-token #local-storage #cram #jwk #authentication

  18. noodles-cram

    CRAM format reader and writer

    v0.89.0 3.4K #bioinformatics #sam #bio

  19. cyanea-io

    File format parsing for the Cyanea bioinformatics ecosystem

    v0.1.0 #sam #bam #bioinformatics #gff #vcf

  20. noodles-bed

    BED (Browser Extensible Data) reader and writer

    v0.31.0 4.2K #bioinformatics #noodles #bed #bio

  21. coverm

    Read coverage calculator for metagenomics

    v0.7.0 #read #metagenomics #calculator #genome #bam #read-alignment #contig #contigs

  22. noodles-bam

    Binary Alignment/Map (BAM) format reader and writer

    v0.86.0 6.1K #bam-format #sam #map-format #bio

  23. noodles-refget

    A refget client

    v0.9.0 #bioinformatics #noodles #bio #api-bindings

  24. deepbiop-bam

    Deep Learning Processing Library for Bam Format

    v0.1.16 #bam #deep-learning #bioinformatics

  25. mudskipper

    Convert genomic alignments to transcriptomic BAM/RAD files

    v0.1.0 #genomics #rna-seq #bam #rad #alignment #transcript

  26. noodles-core

    Shared utilities when working with noodles

    v0.19.0 71K #bioinformatics #bio

  27. cbm

    Use formats found in Commodore Business Machines (CBM) products from the 1980's, including the legendary Commodore 64 home computer

    v0.1.0 #c64 #commodore #d64

  28. nu_plugin_bio

    Parse and manipulate common bioinformatic formats in nushell

    v0.85.0 #bioinformatics #nu-shell #format #fasta #structured-data #parse-and-manipulate

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  29. fg-stitch-lib

    Stitch aligner implementation and supporting utilities

    v0.1.1 #genomics #aligner #bioinformatics #sam #sequencing #read-alignment #stitch #contigs #chimeric

  30. bamkit

    program for bam file manipulation

    v0.2.0 #sam #hts #cli #bam