Lib.rs

› Keywords #bioinformatics #dna #genomics #bio #nucleotide-sequence #archive

#nucleotide

  1. bitnuc

    efficient nucleotide sequence manipulation using 2-bit and 4-bit encodings

    v0.4.1 1.1K #nucleotide-sequence #dna-sequence #bioinformatics #nucleotide #2bit #dna

  2. sigalign

    A Similarity-Guided Alignment Algorithm

    v0.4.2 #bioinformatics #nucleotide #bio

  3. nucs

    working with nucleotide and amino acid sequences

    v0.2.0 #amino-acid #dna #nucleotide #peptide #bio

  4. binseq

    A high efficiency binary format for sequencing data

    v0.9.0 #genomics-sequencing #genomics #sequencing #fastq #bio #nucleotide

  5. nafcodec

    Rust coder/decoder for Nucleotide Archive Format (NAF) files

    v0.3.1 420 #archive #bioinformatics #nucleotide #biology

  6. rust-ena

    ena-crate interacts directly with the European Nucleotide Archive(ENA)

    v0.2.0 #archive #nucleotide #european #async #interact

  7. hooty

    Direct computing of K2P min-max distance matrix

    v0.1.0 #bioinformatics #k2p #nucleotide #distance #ambiguous

  8. codenano

    editing DNA molecular designs

    v0.5.1 #design #dna #nucleotide #helices #strands #molecular

  9. ncbi-vdb-sys

    FFI library for the NCBI VDB

    v0.1.7 #genomics #bioinformatics #sra #nucleotide #ffi

  10. nafcodec-py

    PyO3 bindings and Python interface to the nafcodec crate

    v0.3.1 260 #archive #nucleotide #bioinformatics #biology

  11. codenano-server

    editing DNA molecular designs in a browser

    v0.4.0 #design #codenano #server #dna #docker-build #molecular #nucleotide #jump #helices

  12. hyper-gen

    HyperGen is a high-performance Rust library to sketch genomics files into hypervectors and realize fast Average Nucleotide Identity (ANI) approximation

    v0.2.2 #genomics #genome #sketching #nucleotide #ani #k-mer #hash-set #realize #hyperdimensional #hv

  13. omics-variation

    Foundational representations of variation in the Rust omics ecosystem

    v0.2.0 140 #variations #omics #ecosystem #genomics #nucleotide #rna #data-structures #coordinate-system #dna

  14. nucgen

    generating random nucleotide sequences

    v0.2.0 #random #bioinformatics #nucleotide #nucleotide-sequence #bioinformatics-sequence #random-sequence

  15. nucleociph

    encoding phrases into nucleotide characters, and vice versa

    v1.0.1 #character-encoding #versa #vice #nucleotide #phrase #encryption #treated #00 #01

  16. omics-molecule

    Foundational representations of biological molecules in the Rust omics ecosystem

    v0.1.0 #molecule #omics #nucleotide #ecosystem #representation #biological #genomics #coordinate-system #dna #rna

  17. omics-coordinate

    Foundational representations of coordinates in the Rust omics ecosystem

    v0.2.0 160 #coordinate-system #strand #molecule #interbase #genome #nucleotide #omics #contig #contigs #half-open

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  18. protein_translation

    translate &str or String of RNA sequence with nucleotide into a Vec<&str> of their appropriate protein names

    v0.1.2 #rna #nucleotide #codon #protein #parser

  19. gattaca

    A base4 encoding using the four bases (nucleotides) found in DNA

    v1.0.0 #dna #bases #nucleotide #base4 #four

  20. tarnished

    Very simple CLI app for testing the percent of nucleotides in FASTA files

    v0.4.0 #bioinformatics #fasta #nucleotide #count #tui

  21. vbinseq

    A high efficiency binary format for sequencing data with variable-length records

    v0.1.7 150 #genomics #genomics-sequencing #bioinformatics #fastq #sequencing #nucleotide

  22. omics-core

    Core functionality across the omics family of crates

    v0.1.0 #family #nucleotide #ecosystem #foundation #coordinate-system #data-structures #bug-report #molecule #warnings

  23. orf

    Translates nucleotide sequences to Amino Acid sequences. (RNA and DNA, shifts reading frames and reverses)

    v0.1.0 #amino-acid #dna-sequence #nucleotide #dna-rna #fasta #translates #nucleotide-sequence #shifts #reverses