Lib.rs

› Search #bioinformatics #protein-pdb #pdb #bio #proteomics #dna

rust-sasa

RustSASA is a Rust library for computing the absolute solvent accessible surface area (ASA/SASA) of each atom in a given protein structure using the Shrake-Rupley algorithm

v0.9.2 600 #bioinformatics #protein-structure #rust
bio_files

Save and load common biology file formats

v0.4.6 #biology #molecule #sdf #mol2
rustyms

handle proteomic mass spectrometry data and match peptides to spectra

v0.11.0 #mass-spectrometry #bio #fragmentation #proforma
karma

A sophisticated Hidden Markov Model (HMM) implementation using the Baum-Welch algorithm

v1.0.0 #hidden-markov-model #hmm #machine-learning #statistics #baum-welch
graphics

A 3D rendering engine for rust programs, with GUI integration

v0.5.9 #graphics-rendering-engine #wgpu #render
kira-protein-pruner

High-performance protein analysis tools

v0.1.1 #protein #bioinformatics #proteomics #cli
kira-biodata-manager

Reproducible bio-data manager with a project-local store and a shared global cache. kira-bm it's like npm/cargo/pip for bioinformatics.

v0.1.1 #bioinformatics #genomics #pdb #proteomics #dna
pdbtbx

open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files

v0.12.0 850 #protein-pdb #protein-crystal #crystal #protein #bio #mmcif #pdb
pdbrust

A comprehensive Rust library for parsing and analyzing Protein Data Bank (PDB) files

v0.7.0 #protein-pdb #protein #bioinformatics #chemistry #pdb #structural-biology
haddock-restraints

Generate restraints to be used in HADDOCK

v0.11.1 #bioinformatics #restraints #haddock #structural-biology #protein-docking
rvdna

— AI-native genomic analysis and the .rvdna file format. Variant calling, protein prediction, and HNSW vector search in pure Rust with WASM support.

v0.1.0 #genomics #bioinformatics #vector-search #dna
kira-protein-longevity-analysis

CLI tool for physics-informed protein robustness and fragility analysis under environmental conditions (pH, oxidative stress, temperature)

v0.1.0 #bioinformatics #proteomics #protein #bio
pepterm

View protein structures in your terminal with beautiful color gradients

v0.1.0 #protein-pdb #protein #molecular #visualization #graphics
kurobako

A black-box optimization benchmarking framework

v0.2.10 #black-box-optimization #benchmark #random #black-box-benchmarking #uniform-distribution #optimization-solver #plot #multi-objective-optimization #markdown #studies
lib3dmol

written in rust to read, manipulate, select atoms in protein structure files

v0.4.0 #protein-structure #atom #pdb-format #read #residue #backbone
proteinogenic

Chemical structure generation for protein sequences as SMILES string

v0.2.0 #smiles #cheminformatics #protein #protein-aminoacid #formula #aminoacid
nom-pdb

PDB parser implemented with nom

v0.0.9 #protein-pdb #nom #bioinformatics #protein #parser #pdb
lightdock

Macromolecular docking software based on the GSO algorithm

v0.3.2 #macromolecular-docking #protein-structure #gso #dna #scoring #peptide #membrane-docking #bioinformatics #env-vars
heme

PDB reader and other protein modeling tools

v0.3.2 #modeling #proteins #protein-pdb #atom #parser #pose #protein-structure
pdb-handler

functions to handle PDB files

v0.2.0 #protein-pdb #protein-structure #bioinformatics #pdb #protein
pdbvis

A 3D protein structure viewer that loads and visualizes proteins from the Protein Data Bank (PDB)

v0.1.2 #protein-pdb #visualization #3d #bioinformatics #protein #pdb

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