Lib.rs

› Search #bioinformatics #fasta #genomics #fastq #interval-tree #bam

  1. rust-htslib

    HTSlib bindings and a high level Rust API for reading and writing BAM files

    v1.0.0 8.8K #bam #sequencing #bioinformatics #pileup

  2. rust-lapper

    A fast and easy interval overlap library

    v1.2.0 48K #interval-tree #bioinformatics #tree

  3. bio

    A bioinformatics library for Rust. This library provides implementations of many algorithms and data structures that are useful for bioinformatics, but also in other fields.

    v3.0.0 14K #bioinformatics #continuous-integration #data-structures #bioinformatics-data-structures #algorithm #integration-tests

  4. seq_io

    Fast FASTA, FASTQ and FASTX parsing

    v0.4.0-alpha.0 3.0K #fastq #fasta #bio

  5. primerpincer

    A CLI primer trimming tool for long-read sequencing data

    v0.8.0 #bioinformatics #sequencing #fastq #primers #microbiome

  6. rust-bio-tools

    A set of fast and robust command line utilities for bioinformatics tasks based on Rust-Bio

    v0.42.2 4.1K #bioinformatics #genomics #bam #fastq #rust-bio #fuzzy-matching #csv #html-reports #bcf #plot

  7. simdna

    High-performance SIMD-accelerated DNA sequence encoding supporting all IUPAC nucleotide codes

    v1.0.2 #bioinformatics #iupac #dna

  8. biotools

    bioinformatics CLI tools for sequence analysis and manipulation

    v1.1.0 600 #sequence-analysis #bioinformatics

  9. alignoth

    creating alignment plots from bam files

    v1.4.6 #plot #vega-lite #html #alignment #stdout #bam-file #wizard #visualized

  10. biodiff

    Compare binary files using sequence alignment

    v1.2.1 700 #sequence-alignment #diff #text-search #binary #ascii #binary-diff #cursive #wfa2 #biology #bioinformatics

  11. kmerust

    A fast, parallel k-mer counter for DNA sequences in FASTA and FASTQ files

    v0.3.2 #genomics #bioinformatics #k-mer #fasta #dna

  12. sview-fmindex

    FM-index library with slice view architecture for efficient text indexing and pattern matching

    v0.1.2 #fm-index #pattern-matching #bioinformatics #fmindex #burrows-wheeler

  13. iitree-rs

    Implicit augmented interval tree (IAITree/cgranges) with memory-mapped disk storage

    v0.1.1 #genomics #interval-tree #bioinformatics #data-structures

  14. bio-types

    A collection of common biomedical types for use in rust-bio and rust-htslib

    v1.0.4 15K #biomedical #rust-bio #collection

  15. thaf

    Extracts transcript sequences and gene maps from genome FASTA files using GFF3 annotations

    v0.0.5 #genome #bioinformatics #fasta #gff3 #transcriptome

  16. smyl

    Artificial Neuronal Network in Rust

    v0.1.4 260 #neural-network #deep-learning #machine-learning #computer-vision #rust #bio

  17. faimm

    Random access to indexed fasta using a mmapped file

    v0.5.1 #indexed-fasta #fasta #fai #indexed #bio

  18. fastq

    A parser for fastq

    v0.6.0 200 #bio #parser

  19. natural_constants

    Pre-defined constants from all disciplines (math, physics, ...)

    v0.2.0 #math #constant #physics #science

  20. ebiotic

    interacting with common bioinformatics web services

    v0.0.26 750 #genomics #bioinformatics #biology #ncbi #ebi

  21. nanoq

    Minimal but speedy quality control and summaries of nanopore reads

    v0.10.0 #nanopore #read #filter #summary #ont

  22. finalspark-rs

    live data recording from MEA devices

    v0.1.5 100 #live-data #recording #mea #rust #bio

  23. biodiff-align

    Sequence alignment bindings for biodiff

    v1.2.1-preview #sequence-alignment #biodiff #diff-algorithm #bindings #binary-diff #wfa2 #bioinformatics #biology #rust-bio #gaps

  24. nucleic-acid

    Implementations of Suffix Array, Burrows-Wheeler Transform and FM-index

    v0.1.1 #vector-search #search-index #bwt

    25. Try searching with DuckDuckGo or on crates.io.

  25. ivt

    An interval tree implementation using inclusive ranges

    v0.1.0 #interval-tree #inclusive #range #largely #rust-bio

  26. nclist

    finding overlapping intervals using a nested containment list

    v0.1.1 #overlap #interval #range

  27. parasailors

    SIMD accelerated pairwise genetic sequence alignment

    v0.3.1 #sequence-alignment #bioinformatics #simd

  28. chordclust

    Sequence clustering

    v0.1.0 #cluster-analysis #sequence #sorting #forms #greedy

  29. sars

    Lightweight Suffix Arrays Library for Rust

    v0.1.0 #suffix-array #string-conversion #github #serialize #io #fxhash #bincode #serde #bstr #rustc-hash

  30. bio_edit

    Some tools that are 'internal' for now because they are insufficiently refined and unstable, but which are used by other 'public' crates

    v0.1.1 #internal #refined-and-unstable #github #author #credits #rust-bio

  31. phylogeny

    corresponding binaries for algorithms related to phylogenies

    v0.0.1 #algorithm #phylogenetic-tree #distance-matrix #construct #binaries #metrics