Bioinformatics Packages

Embeddable genomic visualization component based on the Integrative Genomics Viewer

A suite of reusable [React](http://reactjs.org/) components for creating a variety of visualizations involving [multiple sequence alignments](https://en.wikipedia.org/wiki/Multiple_sequence_alignment). [View the live demo here](http://alignment.hyphy.org/

Nucleotide sequence manipulation and analysis library

JavaScript track viewer

Node program to run canvasXpress with react

LexiconMonoSeq, DOM Text based MSA visualization written in Javascript

Vue component for displaying phylogenetic trees

interval tree, for fast overlapping interval queries

Vue component to create a sequence multiple alignment in SVG

Node program to run canvasXpress in the command line

Program to run canvasXpress with node

utility functions to handle DNA/RNA string data

Module for DNA, RNA and protein sequences manipulation

Typescript implementation of pouchDB instance loaded with the GTDB

Vue component for displaying an overview of a multiple sequence alignment

Development fork of igv.js, for patches before merging upstream

A simple parser to convert VCF files to JSON

TnT library for displaying trees and track-based annotations

Angular 12+ components for cytoscape charting.

A library to support headers compatible with BITK's standard.