Open Source Java Data Visualization Software for Linux

A mind mapper, and at the same time an easy-to-operate hierarchical editor with strong emphasis on folding. These two are not really two different things, just two different descriptions of a single application. Often used for knowledge and content management.

Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. A rich scripting language and a well-developed web API allow easy customization of the user interface. Features include interactive animation and linear morphing. Jmol interfaces well with JSpecView for spectroscopy, JSME for 2D->3D conversion, POV-Ray for images, and CAD programs for 3D printing (VRML export).

SciPlore MindMapping is based on FreeMind but extended with features for students & researchers. It integrates mind maps with reference and pdf management (BibTeX support & PDF Bookmark import). Keywords: Mind maps, Mind Mapping, MindMap, JabRef

Analyze and visualize tours in many variations, which are recorded with a GPS device, bike-, exercise- or ergometer-computer. Some highlights: Tools are available to adjust recorded data, GPS tours can be visualized in customizable maps, ...

JaxoDraw is a tool to generate Feynman diagrams in a mouse click-and-drag fashion. Graphs can be exported to a variety of graphics formats and arbitrary latex code can be used for labels to produce high-quality publishing-style figures.

JEuclid is a complete MathML rendering solution, consisting of: a MathViewer application, command line converters from MathML to other formats, an ant task for autmated conversion, display components for AWT and Swing and a component for Apache Cocoon

Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.

Java 2D & 3D visual entity relationship design & modeling (ERD,SQL) for Oracle,MSSQL,Postgres,MySQL,...,Database change&dictionary management, Swing Data Binding, Apache FOP Renderer for dot matrix printers,Sparx Enterprise Architect Reports + more

Karto allows to calibrate a scanned map (or aerial photos) with some known geo-points (Lambert, UTM, ...). After that, you can add any points (GPS points) in the map to build your own map. You can also add a transparent GIF image in the map after calibration (cave, mines, roads, ...). You can realize your own cartes with the data you add inside adding/showing/hiding layers of data. You can import/export your data files (after checking and correcting them) in differents formats.

GpsPrune is a java application to view and manage coordinate data, eg from GPS units. With it you can load a variety of text and Xml formats, view the data (in 2d and 3d), edit and convert the data, correlate photos and audio, create charts and more.

Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server.

Bloof is an infrastructure for analytical processing of version control data. The main distribution provides a GUI for visualizing the evolution of a software project. External tools can access Bloof via Java API and a XML result mechanism.

Graph visualization using hyperbolic geometry (hyperbolic trees, but also general graphs). Applications cover web site structures, topic maps, organisational charts and wikis.

Goal of our project CSX (City Stats X) is to program a generic interface to visualize and present social data about a city. We will present this on the example of the city of Linz in Austria.

CSF-Crowd Simulation Framework A Massive Crowd Simulation is a computer simulation of a crowd of agents. Agents are digital characters with a certain artificial intelligence. The individual agents can act on their own, they don't need to be pre-prog

Graphical front-end for GNU Octave. Edit formulas in mathematical notation. Uses Octave (Matlab clone) as a math engine.

The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io

Tockit tries to build a framework for Conceptual Knowledge Processing (CKP) and Formal Concept Analysis (FCA) in Java, using a component-based approach, XML formats and a three-tier architecture.

By using a neural net from neuroph.org with the programmlanguage Java, you can change the net by this software. Easy watch it on the screen and move the values up or down. More or less value at the output neurons. Saving, Loading from different .nnet`s. Adding comments. Changing the visible output neuron Setting wished input neurons to get visible. A small fast and easy weight version and a continuing version, which should get involved in the neuroph project.

VISUAL is a program package for creating and running HMI (human machine interfaces) and SCADA or process visualization applications under LINUX. It enables you to control/operate a/many PLC controlled machine(s) through a computer

j-Algo is an algorithm visualization tool, especially useful for students and lecturers of computer science. It is written in Java and platform independent. j-Algo is developed at Dresden University of Technology.

Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and much more. AIS comes with self-service BI capabilities enabling end users to make the data-driven decision at the right time, all with minimal IT dependency. Tightly integrated user and role management ensure correct information distribution that prevents unauthorized access to information, collaboration is ever so easy with AIS that people with no BI knowledge can start real-time collaboration in minutes. AIS 2 is also available from the website http://activeintelligence.co.uk/download

A cellulary Automata.

Cewolf is a tag library for charts of all kinds. It enables every JSP to easily embed chart images. It can be used by any web applications running in a servlet container. No Java scriplet code is needed to define charts.

CrimeStat is an web-application which analyses the police's press releases of Berlin and visualizes the different criminal offences on a map of Berlin. It also shows different statistics about the crimes.