3 projects for "algorithm" with 2 filters applied:

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  • 1
    levin

    levin

    in-memory key value server with fuzzy search capabilities

    Levin is an event-based key/value server based on radix-tree (space optimized trie). Key search can be performed with an approximate key matching algorithm based on Levenshtein edit distance.
    Downloads: 0 This Week
    Last Update:
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  • 2
    TEACUP

    TEACUP

    TCP Experiment Automation Controlled Using Python

    ...TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP congestion control algorithm), an experiment is made up of multiple tests. For each experiment and test, TEACUP collects a range of data, such as tcpdump files of traffic seen or TCP stack information (e.g. using Web10G). TEACUP also collects a variety of metadata from the end hosts and bottleneck router, such as the actual OS/kernel version(s) used. ...
    Downloads: 0 This Week
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  • 3

    HPeak

    A HMM-based algorithm for defining enriched regions from ChIP-seq data

    HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/HPeak.pl -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/HPeak.pl...
    Downloads: 0 This Week
    Last Update:
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