Open Source Ruby Scientific/Engineering Software for Linux

The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more.

A quantitative finance C++ library for modeling, pricing, trading, and risk management in real-life. A cross-platform free/open-source tool for derivatives and financial engineering.

A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested in reuse, and we focus on common NLP tasks that are broadly useful for textmining.

Object oriented reusable software classes designed to be used to construct larger software projects developed in multiple software languages.

JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts

Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. (English, French, Spanish, Portuguese, Russian, Turkish, Georgian, and Chinese.)

BenchLab is a Web Application benchmarking framework using real web browsers.

CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft

moved to https://github.com/Mithos/Euclid/wiki

The Feynman Simulation Framework provides a standard methodology for software engineers to develop simulations in Ruby with the flexibility to develop only the classes that are necessary to solve the physical problem.

GRAIL Real Time Location Service (RTLS)

Gavrog stands for "Generation, Analysis and Visualization of Reticular Ornaments using Gavrog". It is a Java library together with a suite of interactive applications for the study of periodic net-like structures in space and their applications.

This project contains applications which allow the user the draw the common geometry graphics (both 2D and 3D) which is available from the library.

Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.

Simulator of virtual animals made up of biological neural networks for research in the Computational Neuroscience field.

OAproject implements a plataform to allow applications to interact. Apps using the platform send/receive messages through a message oriented middleware. Main features are a Single Sign On (SSO), Identity Management System (IMS) and a provisioning system

OpenBRR2 project focuses on the re-write of the original "OpenBRR - Data" (http://sourceforge.net/projects/openbrr) project. The aim is to develop a hosted data aggregation application for all F/LOSS projects.

The Phenoscape project attempts to formalize the description of evolutionary characters to make them interoperable and computable with the body of phenotype annotation being generated by model organism databases, and other biomedical research.

PORIS toolkit allows describing graph-based systems and their behavior in a snapshot. It provides a web editor for a domain visual specific language (DSL) and transformation tools to generate software prototypes, system configurations, ...

This is a recopilation of programs programmed by Eliot Hijano using either Java or Ruby. All the programs have something in common with both physics and Maths and are explained mathematically and physically in its own pdf.

Design and develop Recommendation and Adaptive Prediction Engines to address eCommerce opportunities. Build a portfolio of engines by creating and porting algorithms from multiple disciplines to a usable form. Try to solve NetFlix and other challenges.

Netlist database and manipulation API with interfaces to Java and Ruby. Verilog netlist inputs are supported. Project branch continues to evolve: https://github.com/gburdell/nldb including addition of tclsh UI.

The program fuses 2 sets of molecules. It tries different relative positions of molecules before binding them, so that there is no or minimal intersection in the resulting molecule. The atom to be fused in a molecule is labeled with an R symbol.

reputron is a knowledge extraction engine platform that covers all aspect of text mining, relevance, indexing and querying on a corpus of text documents.