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ORCIDRuochi Zhang
This is just a disambiguation page, and is not intended to be the bibliography of an actual person. Any publication listed on this page has not been assigned to an actual author yet. If you know the true author of one of the publications listed below, you are welcome to contact us.
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2020 – today
- 2024
[j17]Ruochi Zhang, Chao Wu, Qian Yang, Chang Liu, Yan Wang
, Kewei Li, Lan Huang, Fengfeng Zhou:
MolFeSCue: enhancing molecular property prediction in data-limited and imbalanced contexts using few-shot and contrastive learning. Bioinform. 40(4) (2024)- [j16]Xiaopeng Xu, Chencheng Xu, Wenjia He, Lesong Wei, Haoyang Li, Juexiao Zhou, Ruochi Zhang, Yu Wang, Yuanpeng Xiong, Xin Gao:
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer. Bioinform. 40(6) (2024) - [j15]Yan Wang, Ruochi Zhang, Qian Yang, Qiong Zhou, Shengde Zhang, Yusi Fan, Lan Huang, Kewei Li, Fengfeng Zhou:
FairCare: Adversarial training of a heterogeneous graph neural network with attention mechanism to learn fair representations of electronic health records. Inf. Process. Manag. 61(2): 103682 (2024) - [i4]Ruochi Zhang, Haoran Wu, Chang Liu, Huaping Li, Yuqian Wu, Kewei Li, Yifan Wang, Yifan Deng, Jiahui Chen, Fengfeng Zhou, Xin Gao:
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding. CoRR abs/2401.11360 (2024) - [i3]Kewei Li, Yuqian Wu, Yutong Guo, Yinheng Li, Yusi Fan, Ruochi Zhang, Lan Huang, Fengfeng Zhou:
AMPCliff: quantitative definition and benchmarking of activity cliffs in antimicrobial peptides. CoRR abs/2404.09738 (2024) - 2023
- [j14]Meiyu Duan, Yueying Wang, Dong Zhao, Hongmei Liu, Gongyou Zhang, Kewei Li, Haotian Zhang, Lan Huang, Ruochi Zhang, Fengfeng Zhou:
Orchestrating information across tissues via a novel multitask GAT framework to improve quantitative gene regulation relation modeling for survival analysis. Briefings Bioinform. 24(4) (2023) - [j13]Yan Wang, Ruochi Zhang, Shengde Zhang, Liming Guo, Qiong Zhou, Bowen Zhao, Xiaotong Mo, Qian Yang, Yajuan Huang, Kewei Li, Yusi Fan, Lan Huang, Fengfeng Zhou:
OCMR: A comprehensive framework for optical chemical molecular recognition. Comput. Biol. Medicine 163: 107187 (2023) - [j12]Xiaopeng Xu, Tiantian Xu, Juexiao Zhou, Xingyu Liao, Ruochi Zhang, Yu Wang, Lu Zhang, Xin Gao:
AB-Gen: Antibody Library Design with Generative Pre-Trained Transformer and Deep Reinforcement Learning. Genom. Proteom. Bioinform. 21(5): 1043-1053 (2023) - [i2]Ruochi Zhang, Haoran Wu, Yuting Xiu, Kewei Li, Ningning Chen, Yu Wang, Yan Wang, Xin Gao, Fengfeng Zhou:
PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids. CoRR abs/2311.04419 (2023) - 2022
- [c10]Ruochi Zhang, Tianming Zhou, Jian Ma:
Ultrafast and Interpretable Single-Cell 3D Genome Analysis with Fast-Higashi. RECOMB 2022: 300-301 - 2021
- [j11]Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiaojian Wang, Fengfeng Zhou:
XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties. J. Chem. Inf. Model. 61(6): 2697-2705 (2021) - [j10]Daiguo Deng, Xiaowei Chen, Ruochi Zhang, Zengrong Lei, Xiaojian Wang, Fengfeng Zhou:
Correction to "XGraphBoost: Extracting Graph Neural Network-Based Features for a Better Prediction of Molecular Properties". J. Chem. Inf. Model. 61(9): 4820-4822 (2021) - 2020
- [j9]Ruochi Zhang, Parv Venkitasubramaniam:
False Data Injection and Detection in LQG Systems: A Game Theoretic Approach. IEEE Trans. Control. Netw. Syst. 7(1): 338-348 (2020) - [j8]Ruochi Zhang, Parv Venkitasubramaniam:
Optimal Local Differentially Private Quantization. IEEE Trans. Signal Process. 68: 6509-6520 (2020) - [c9]Ruochi Zhang, Yuesong Zou, Jian Ma:
Hyper-SAGNN: a self-attention based graph neural network for hypergraphs. ICLR 2020 - [c8]Ruochi Zhang, Jian Ma:
Probing Multi-way Chromatin Interaction with Hypergraph Representation Learning. RECOMB 2020: 276-277
2010 – 2019
- 2019
- [i1]Ruochi Zhang, Yuesong Zou, Jian Ma:
Hyper-SAGNN: a self-attention based graph neural network for hypergraphs. CoRR abs/1911.02613 (2019) - 2018
- [j7]Ruochi Zhang, Yuchuan Wang, Yang Yang, Yang Zhang, Jian Ma:
Predicting CTCF-mediated chromatin loops using CTCF-MP. Bioinform. 34(13): i133-i141 (2018) - [j6]Ruochi Zhang, Ruixue Zhao, Xinyang Zhao, Di Wu, Weiwei Zheng, Xin Feng, Fengfeng Zhou:
pyHIVE, a health-related image visualization and engineering system using Python. BMC Bioinform. 19(1): 452:1-452:6 (2018) - [j5]Ruixue Zhao, Ruochi Zhang, Tongyu Tang, Xin Feng, Jialiang Li, Yue Liu, Renxiang Zhu, Guangze Wang, Kangning Li, Wenyang Zhou, Yunfei Yang, Yuzhao Wang, Yuanjie Ba, Jiaojiao Zhang, Yang Liu, Fengfeng Zhou:
TriZ-a rotation-tolerant image feature and its application in endoscope-based disease diagnosis. Comput. Biol. Medicine 99: 182-190 (2018) - [c7]Ruochi Zhang, Parv Venkitasubramaniam:
Optimal Multi-Source Inference Privacy - A Generalized Lloyd-Max Algorithm. Allerton 2018: 219-226 - [c6]Ruochi Zhang, Parv Venkitasubramaniam:
Optimal Distribution Mapping for Inference Privacy. APSIPA 2018: 1179-1187 - [c5]Ruochi Zhang, Parv Venkitasubramaniam:
Mutual-Information-Private Online Gradient Descent Algorithm. ICASSP 2018: 2077-2081 - 2017
- [j4]Yang Yang, Ruochi Zhang, Shashank Singh, Jian Ma:
Exploiting sequence-based features for predicting enhancer-promoter interactions. Bioinform. 33(14): i252-i260 (2017) - [j3]Ruiquan Ge, Guoqin Mai, Ruochi Zhang, Xundong Wu, Qing Wu, Fengfeng Zhou:
MUSTv2: An Improved De Novo Detection Program for Recently Active Miniature Inverted Repeat Transposable Elements (MITEs). J. Integr. Bioinform. 14(3) (2017) - [j2]Ruochi Zhang, Parv Venkitasubramaniam:
Stealthy Control Signal Attacks in Linear Quadratic Gaussian Control Systems: Detectability Reward Tradeoff. IEEE Trans. Inf. Forensics Secur. 12(7): 1555-1570 (2017) - [c4]Ruochi Zhang, Parv Venkitasubramaniam:
A game theoretic approach to analyze false data injection and detection in LQG system. CNS 2017: 427-431 - 2016
- [c3]Ruochi Zhang, Parv Venkitasubramaniam:
Stealthy control signal attacks in vector LQG systems. ACC 2016: 1179-1184 - 2015
- [c2]Ruochi Zhang, Parv Venkitasubramaniam:
Stealthy control signal attacks in scalar LQG systems. GlobalSIP 2015: 240-244 - 2011
- [j1]Ruihua Song, Qingwei Guo, Ruochi Zhang, Guomao Xin, Ji-Rong Wen, Yong Yu, Hsiao-Wuen Hon:
Select-the-Best-Ones: A new way to judge relative relevance. Inf. Process. Manag. 47(1): 37-52 (2011)
2000 – 2009
- 2008
- [c1]Yu Zheng, Longhao Wang, Ruochi Zhang, Xing Xie, Wei-Ying Ma:
GeoLife: Managing and Understanding Your Past Life over Maps. MDM 2008: 211-212
Coauthor Index
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