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@USDA-ARS-GBRU

USDA-ARS Genomics and Bioinformatics Research Unit

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  1. itsxpress Public

    Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

    Python 13 10

  2. GuideMaker Public

    GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes

    Python 8 3

  3. micrompn Public

    MicroMPN: A Python command line program for automating most probable number (MPN) estimates in microtiter plates

    Python 1 1

  4. PanPipes Public

    Test sets and pipeline scripts for pan-genomic graph analysis

    Python 16 2

  5. branchwater-web Public

    web app for search of SRA with Mastiff

    HTML 2

Repositories

Showing 10 of 72 repositories
  • SugarcaneCrossingTool Public
    R 0 0 4 0 Updated Feb 22, 2025
  • SalmoVar Public

    Salmonella variant-calling pipeline

    0 MIT 0 0 0 Updated Feb 3, 2025
  • seed-microbiome-traits Public
    R 0 0 0 0 Updated Jan 30, 2025
  • PanPipes Public

    Test sets and pipeline scripts for pan-genomic graph analysis

    Python 16 2 0 0 Updated Jan 30, 2025
  • tamipami Public

    A tool for finding the TAM and PAM sites of new Cas and transposon endonucleases from NGS screens

    Python 1 1 1 0 Updated Jan 17, 2025
  • itsxpress Public

    Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

    Python 13 10 1 0 Updated Jan 14, 2025
  • logomaker Public Forked from jbkinney/logomaker

    Software for the visualization of sequence-function relationships

    Jupyter Notebook 0 MIT 39 0 0 Updated Jan 2, 2025
  • sewrl_stinkbug_diet Public

    A project to demultiplex and analize

    Shell 0 0 0 0 Updated Dec 13, 2024
  • QTLsurge Public

    Software for iterative genotyping design in a QTL-seq experiment

    Perl 4 MIT 1 1 0 Updated Dec 2, 2024
  • crossword Public
    R 3 2 4 0 Updated Oct 9, 2024
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