DoRC is the abbreviation of Discovery of Rare Cells (DoRC), in the cost of minutes, from ultra-large scRNA-seq data.
- MulticoreTSNE (https://github.com/DmitryUlyanov/Multicore-TSNE)
- FiRE (https://github.com/princethewinner/FiRE (branch: master))
- Pyod (https://pyod.readthedocs.io/en/latest/)
- sklearn, numpy, pandas, pickle...
thanks for all the authors' work!
- run_dorc_68k_all.py: script for running DoRC in the pbmcs_68k dataset, which consists of 68579 PBMCs (www.10xgenomics.com)
- run_fire_68k_all.py: the same above but with FiRE instead.
Any question, please do not hesitate to contact me with [email protected], or submit issues here.