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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 646 369

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 311 80

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 309 80

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 253 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 146 91

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 115 21

Repositories

Showing 10 of 182 repositories
  • ccn-software-jan-2025 Public

    Materials for CCN software workshop at Flatiron, Jan 2025

    flatironinstitute/ccn-software-jan-2025’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jan 3, 2025
  • neurorse-workshops Public

    Built workshop materials for the NeuroRSE packages

    flatironinstitute/neurorse-workshops’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 3, 2025
  • jenkins-webserver-template Public

    Template repo to serve as recipient of jenkins documentation build pushes

    flatironinstitute/jenkins-webserver-template’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 3, 2025
  • jax-finufft Public

    JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library

    flatironinstitute/jax-finufft’s past year of commit activity
    Python 84 Apache-2.0 3 6 (1 issue needs help) 0 Updated Jan 3, 2025
  • stan-playground Public

    Run Stan models in the browser

    flatironinstitute/stan-playground’s past year of commit activity
    TypeScript 39 Apache-2.0 1 19 3 Updated Jan 2, 2025
  • neuroRSE Public

    Website for CCN's neuroRSE group

    flatironinstitute/neuroRSE’s past year of commit activity
    CSS 1 MIT 0 0 0 Updated Jan 2, 2025
  • nemos Public

    NEural MOdelS, a statistical modeling framework for neuroscience.

    flatironinstitute/nemos’s past year of commit activity
    Python 83 MIT 8 98 2 Updated Jan 2, 2025
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 44 Apache-2.0 9 7 0 Updated Jan 1, 2025
  • finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    flatironinstitute/finufft’s past year of commit activity
    C++ 309 80 54 (3 issues need help) 8 Updated Dec 30, 2024
  • Cryo-EM-Heterogeneity-Challenge-1 Public

    The Inaugural Flatiron Institute Cryo-EM Heterogeneity Community Challenge

    flatironinstitute/Cryo-EM-Heterogeneity-Challenge-1’s past year of commit activity
    Jupyter Notebook 6 MIT 0 17 1 Updated Dec 29, 2024
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