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1. mims-harvard/TDC mims-harvard/TDC Public

   Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

   Jupyter Notebook 1k 174

2. DeepPurpose DeepPurpose Public

   A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

   Jupyter Notebook 988 277

3. clinicalBERT clinicalBERT Public

   ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

   Jupyter Notebook 386 99

4. mims-harvard/TxGNN mims-harvard/TxGNN Public

   TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

   Jupyter Notebook 159 35

5. snap-stanford/conformalized-gnn snap-stanford/conformalized-gnn Public

   Uncertainty Quantification over Graph with Conformalized Graph Neural Networks (NeurIPS 2023)

   Python 75 6

6. snap-stanford/GEARS snap-stanford/GEARS Public

   GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

   Python 214 42