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Commits on Jul 2, 2018

• Merge branch 'develop' into feat/MultiModal

  

  Shiwei Zheng

  committed
  551014f

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Commits on Jun 29, 2018

• Update documents

  

  Shiwei Zheng

  committed
  7ff7f0e

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Commits on Jun 26, 2018

• make caret and ranger suggested packages

  andrewwbutler

  committed
  86b6a20

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Commits on Jun 25, 2018

• Make tclust a suggested package

  

  Paul Hoffman

  committed
  603caf6

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• Make VGAM a suggested package

  

  Paul Hoffman

  committed
  917d675

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• Replace FNN with RANN

  

  Paul Hoffman

  committed
  63224eb

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• Remove gdata dependency

  

  Paul Hoffman

  committed
  8cd5736

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• Remove dependencies

  

  Paul Hoffman

  committed
  9c7205c

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Commits on Jun 12, 2018

• Add functions HTOHeatmap and MultiModal_CCA; fix bug in HTODemux

  

  Shiwei Zheng

  committed
  d9d7d91

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Commits on Jun 11, 2018

• Address satijalab#536: allow setting random seed for UMAP

  

  Paul Hoffman

  committed
  fc3ea88

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• Update imports

  

  Paul Hoffman

  committed
  71896ba

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Commits on Jun 5, 2018

• Update RunPhate for greater compatability

  

  Paul Hoffman

  committed
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Commits on May 30, 2018

• Add RenameCells function

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  lazappi

  committed
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Commits on May 29, 2018

• fix hdf5r imports

  andrewwbutler

  committed
  fe2aca3

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Commits on May 28, 2018

• Merge branch 'readh5' into develop

  andrewwbutler

  committed
  4f971c7

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• run docs

  andrewwbutler

  committed
  e432555

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Commits on May 9, 2018

• Update documentation

  

  Paul Hoffman

  committed
  1cb24c9

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• New show method for dim.reduction objects

  

  Paul Hoffman

  committed
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Commits on May 4, 2018

• change default latent.vars value to NULL to avoid warnings with default settings, clean up message in RegressOut, remove gridExtra dependency

  andrewwbutler

  committed
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Commits on May 2, 2018

• Fix more S3 method registrations

  

  Paul Hoffman

  committed
  23c4b37

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• Update NAMESPACE

  

  Paul Hoffman

  committed
  31ff4f2

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• Update SplitDotPlotGG to take any number of groups

  timoast

  committed
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Commits on May 1, 2018

• Merge develop into feat/conversions

  

  Paul Hoffman

  committed
  727404a

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• Merge branch 'develop' into feat/conversions

  

  Paul Hoffman

  committed
  51912c3

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• Use S3 methods for 'as' to remove errors with setAs

  

  Paul Hoffman

  committed
  bf775b3

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Commits on Apr 30, 2018

• clean up conversions, fix conversion from anndata to seurat

  andrewwbutler

  committed
  6a5e509

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• Merge branch 'develop' into feat/UMAP

  

  Paul Hoffman

  committed
  e242786

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• Fixes to RunUMAP

  

  Paul Hoffman

  committed
  80aba61

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• Address satijalab#433

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  Paul Hoffman

  committed
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• Import approx from stats

  

  Paul Hoffman

  committed
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Commits on Apr 24, 2018

• update convert fxns

  andrewwbutler

  committed
  f659760

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• Add conversion infrastructure

  

  Paul Hoffman

  committed
  79126e9

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Commits on Apr 22, 2018

• Remove CalcUMI

  

  Paul Hoffman

  committed
  34d1d78

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Commits on Apr 3, 2018

• Add new CalcUMI and GetVariableGenes

  

  Paul Hoffman

  committed
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Commits on Mar 27, 2018

• Add rudimentary version of FetchData for loom objects

  

  Paul Hoffman

  committed
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