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Azide-alkyne Huisgen cycloaddition

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Azide-alkyne Huisgen cycloaddition
Named after Rolf Huisgen
Reaction type Ring forming reaction
Identifiers
Organic Chemistry Portal huisgen-1,3-dipolar-cycloaddition
RSC ontology ID RXNO:0000269

The azide-alkyne Huisgen cycloaddition is a 1,3-dipolar cycloaddition between an azide and a terminal or internal alkyne to give a 1,2,3-triazole. Rolf Huisgen[1] was the first to understand the scope of this organic reaction. American chemist Karl Barry Sharpless has referred to copper-catalyzed version of this cycloaddition as "the cream of the crop" of click chemistry[2] and "the premier example of a click reaction".[3]

Thermal Huisgen 1,3-dipolar cycloaddition.

In the reaction above[4] azide 2 reacts neatly with alkyne 1 to afford the product triazole as a mixture of 1,4-adduct (3a) and 1,5-adduct (3b) at 98 °C in 18 hours.

The standard 1,3-cycloaddition between an azide 1,3-dipole and an alkene as dipolarophile has largely been ignored due to lack of reactivity as a result of electron-poor olefins and elimination side reactions. Some success has been found with non-metal-catalyzed cycloadditions, such as the reactions using dipolarophiles that are electron-poor olefins[5] or alkynes.

Although azides are not the most reactive 1,3-dipole available for reaction, they are preferred for their relative lack of side reactions and stability in typical synthetic conditions.

Copper catalysis

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A notable variant of the Huisgen 1,3-dipolar cycloaddition is the copper(I) catalyzed variant, no longer a true concerted cycloaddition, in which organic azides and terminal alkynes are united to afford 1,4-regioisomers of 1,2,3-triazoles as sole products (substitution at positions 1' and 4' as shown above). The copper(I)-catalyzed variant was first reported in 2002 in independent publications by Morten Meldal at the Carlsberg Laboratory in Denmark[6] and Valery Fokin and K. Barry Sharpless at the Scripps Research Institute.[7] While the copper(I)-catalyzed variant gives rise to a triazole from a terminal alkyne and an azide, formally it is not a 1,3-dipolar cycloaddition and thus should not be termed a Huisgen cycloaddition. This reaction is better termed the Copper(I)-catalyzed Azide-Alkyne Cycloaddition (CuAAC).

While the reaction can be performed using commercial sources of copper(I) such as cuprous bromide or iodide, the reaction works much better using a mixture of copper(II) (e.g. copper(II) sulfate) and a reducing agent (e.g. sodium ascorbate) to produce Cu(I) in situ. As Cu(I) is unstable in aqueous solvents, stabilizing ligands are effective for improving the reaction outcome, especially if tris(benzyltriazolylmethyl)amine (TBTA) is used. The reaction can be run in a variety of solvents, and mixtures of water and a variety of (partially) miscible organic solvents including alcohols, DMSO, DMF, tBuOH and acetone. Owing to the powerful coordinating ability of nitriles towards Cu(I), it is best to avoid acetonitrile as the solvent. The starting reagents need not be completely soluble for the reaction to be successful. In many cases, the product can simply be filtered from the solution as the only purification step required.

NH-1,2,3-triazoles are also prepared from alkynes in a sequence called the Banert cascade.

The utility of the Cu(I)-catalyzed click reaction has also been demonstrated in the polymerization reaction of a bis-azide and a bis-alkyne with copper(I) and TBTA to a conjugated fluorene based polymer.[8] The degree of polymerization easily exceeds 50. With a stopper molecule such as phenyl azide, well-defined phenyl end-groups are obtained.

click polymer
click polymer

The copper-mediated azide-alkyne cycloaddition is receiving widespread use in material and surface sciences.[9] Most variations in coupling polymers with other polymers or small molecules have been explored. Current shortcomings are that the terminal alkyne appears to participate in free-radical polymerizations. This requires protection of the terminal alkyne with a trimethyl silyl protecting group and subsequent deprotection after the radical reaction are completed. Similarly the use of organic solvents, copper (I) and inert atmospheres to do the cycloaddition with many polymers makes the "click" label inappropriate for such reactions. An aqueous protocol for performing the cycloaddition with free-radical polymers is highly desirable.

The CuAAC click reaction also effectively couples polystyrene and bovine serum albumin (BSA).[10] The result is an amphiphilic biohybrid. BSA contains a thiol group at Cys-34 which is functionalized with an alkyne group. In water the biohybrid micelles with a diameter of 30 to 70 nanometer form aggregates.

Copper catalysts

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The use of a Cu catalyst in water was an improvement over the same reaction first popularized by Rolf Huisgen in the 1970s, which he ran at elevated temperatures.[11] The traditional reaction is slow and thus requires high temperatures. However, the azides and alkynes are both kinetically stable.

As mentioned above, copper-catalysed click reactions work essentially on terminal alkynes. The Cu species undergo metal insertion reaction into the terminal alkynes. The Cu(I) species may either be introduced as preformed complexes, or are otherwise generated in the reaction pot itself by one of the following ways:

  • A Cu2+ compound is added to the reaction in presence of a reducing agent (e.g. sodium ascorbate) which reduces the Cu from the (+2) to the (+1) oxidation state. The advantage of generating the Cu(I) species in this manner is it eliminates the need of a base in the reaction. Also the presence of reducing agent makes up for any oxygen which may have gotten into the system. Oxygen oxidises the Cu(I) to Cu(II) which impedes the reaction and results in low yields. One of the more commonly used Cu compounds is CuSO4.
  • Oxidation of Cu(0) metal
  • Halides of copper may be used where solubility is an issue. However, the iodide and bromide Cu salts require either the presence of amines or higher temperatures.

Commonly used solvents are polar aprotic solvents such as THF, DMSO, acetonitrile, DMF as well as in non-polar aprotic solvents such as toluene. Neat solvents or a mixture of solvents may be used.

DIPEA (N,N-Diisopropylethylamine) and Et3N (triethylamine) are commonly used bases.[12]

Mechanism

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A mechanism for the reaction has been suggested based on density functional theory calculations.[13] Copper is a 1st row transition metal. It has the electronic configuration [Ar] 3d10 4s1. The copper (I) species generated in situ forms a pi complex with the triple bond of a terminal alkyne. In the presence of a base, the terminal hydrogen, being the most acidic, is deprotonated first to give a Cu acetylide intermediate. Studies have shown that the reaction is second order with respect to Cu. It has been suggested that the transition state involves two copper atoms.[14][15][16][17][18][19] One copper atom is bonded to the acetylide while the other Cu atom serves to activate the azide. The metal center coordinates with the electrons on the nitrogen atom. The azide and the acetylide are not coordinated to the same Cu atom in this case. The ligands employed are labile and are weakly coordinating. The azide displaces one ligand to generate a copper-azide-acetylide complex. At this point cyclization takes place. This is followed by protonation; the source of proton being the hydrogen which was pulled off from the terminal acetylene by the base. The product is formed by dissociation and the catalyst ligand complex is regenerated for further reaction cycles.

The reaction is assisted by the copper, which, when coordinated with the acetylide lowers the pKa of the alkyne C-H by up to 9.8 units. Thus under certain conditions, the reaction may be carried out even in the absence of a base.

In the uncatalysed reaction the alkyne remains a poor electrophile. Thus high energy barriers lead to slow reaction rates.[20]

Mechanism for Copper-catalysed click chemistry.
Mechanism for Copper-catalysed click chemistry.

Ligand assistance

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The ligands employed are usually labile i.e. they can be displaced easily. Though the ligand plays no direct role in the reaction the presence of a ligand has its advantages. The ligand protects the Cu ion from interactions leading to degradation and formation of side products and also prevents the oxidation of the Cu(I) species to the Cu(II). Furthermore, the ligand functions as a proton acceptor thus eliminating the need of a base.[21]

Ruthenium catalysis

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The ruthenium-catalysed 1,3-dipolar azide-alkyne cycloaddition (RuAAC) gives the 1,5-triazole. Unlike CuAAC in which only terminal alkynes reacted, in RuAAC both terminal and internal alkynes can participate in the reaction. This suggests that ruthenium acetylides are not involved in the catalytic cycle.

The proposed mechanism suggests that in the first step, the spectator ligands undergo displacement reaction to produce an activated complex which is converted, through oxidative coupling of an alkyne and an azide to the ruthenium containing metallacycle (Ruthenacycle). The new C-N bond is formed between the more electronegative and less sterically demanding carbon of the alkyne and the terminal nitrogen of the azide. The metallacycle intermediate then undergoes reductive elimination releasing the aromatic triazole product and regenerating the catalyst or the activated complex for further reaction cycles.

Cp*RuCl(PPh3)2, Cp*Ru(COD) and Cp*[RuCl4] are commonly used ruthenium catalysts. Catalysts containing cyclopentadienyl (Cp) group are also used. However, better results are observed with the pentamethylcyclopentadienyl(Cp*) version. This may be due to the sterically demanding Cp* group which facilitates the displacement of the spectator ligands.[22][23]

Mechanism for ruthenium-catalysed click chemistry
Mechanism for ruthenium-catalysed click chemistry

Silver catalysis

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Recently, the discovery of a general Ag(I)-catalyzed azide–alkyne cycloaddition reaction (Ag-AAC) leading to 1,4-triazoles is reported. Mechanistic features are similar to the generally accepted mechanism of the copper(I)-catalyzed process. Silver(I)-salts alone are not sufficient to promote the cycloaddition. However the ligated Ag(I) source has proven to be exceptional for AgAAC reaction.[24][25] Curiously, pre-formed silver acetylides do not react with azides; however, silver acetylides do react with azides under catalysis with copper(I).[26]

References

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  1. ^ Huisgen, R. (1961). "Centenary Lecture - 1,3-Dipolar Cycloadditions". Proceedings of the Chemical Society of London: 357. doi:10.1039/PS9610000357.
  2. ^ H. C. Kolb; M. G. Finn; K. B. Sharpless (2001). "Click Chemistry: Diverse Chemical Function from a Few Good Reactions". Angewandte Chemie International Edition. 40 (11): 2004–2021. doi:10.1002/1521-3773(20010601)40:11<2004::AID-ANIE2004>3.0.CO;2-5. PMID 11433435.
  3. ^ Kolb, H.C.; Sharpless, B.K. (2003). "The growing impact of click chemistry on drug discovery". Drug Discov Today. 8 (24): 1128–1137. doi:10.1016/S1359-6446(03)02933-7. PMID 14678739.
  4. ^ Development and Applications of Click Chemistry Gregory C. Patton November 8, 2004 http://www.scs.uiuc.edu Online[permanent dead link‍]
  5. ^ David Amantini; Francesco Fringuelli; Oriana Piermatti; Ferdinando Pizzo; Ennio Zunino & Luigi Vaccaro (2005). "Synthesis of 4-Aryl-1H-1,2,3-triazoles through TBAF-Catalyzed [3 + 2] Cycloaddition of 2-Aryl-1-nitroethenes with TMSN3 under Solvent-Free Conditions". The Journal of Organic Chemistry. 70 (16): 6526–6529. doi:10.1021/jo0507845. PMID 16050724.
  6. ^ Christian W. Tornøe; Caspar Christensen & Morten Meldal (2002). "Peptidotriazoles on Solid Phase: [1,2,3]-Triazoles by Regiospecific Copper(I)-Catalyzed 1,3-Dipolar Cycloadditions of Terminal Alkynes to Azides". Journal of Organic Chemistry. 67 (9): 3057–3064. doi:10.1021/jo011148j. PMID 11975567.
  7. ^ Vsevolod V. Rostovtsev; Luke G. Green; Valery V. Fokin; K. Barry Sharpless (2002). "A Stepwise Huisgen Cycloaddition Process: Copper(I)-Catalyzed Regioselective Ligation of Azides and Terminal Alkynes". Angewandte Chemie International Edition. 41 (14): 2596–2599. doi:10.1002/1521-3773(20020715)41:14<2596::AID-ANIE2596>3.0.CO;2-4. PMID 12203546.
  8. ^ D. J. V. C. van Steenis; O. R. P. David; G. P. F. van Strijdonck; J. H. van Maarseveen; J. N. H. Reek (2005). "Click-chemistry as an efficient synthetic tool for the preparation of novel conjugated polymers". Chemical Communications. 34 (34): 4333–4335. doi:10.1039/b507776a. PMID 16113739.
  9. ^ R.A. Evans (2007). "The Rise of Azide–Alkyne 1,3-Dipolar 'Click' Cycloaddition and its Application to Polymer Science and Surface Modification". Australian Journal of Chemistry. 60 (6): 384–395. doi:10.1071/CH06457.
  10. ^ A. J. Dirks; S. S. van Berkel; N. S. Hatzakis; J. A. Opsteen; F. L. van Delft; J. J. L. M. Cornelissen; A. E. Rowan; J. C. M. van Hest; F. P. J. T. Rutjes; R. J. M. Nolte (2005). "Preparation of biohybrid amphiphiles via the copper catalysed Huisgen [3 + 2] dipolar cycloaddition reaction". Chemical Communications. 33 (33): 4172–4174. doi:10.1039/b508428h. hdl:2066/32869. PMID 16100593.
  11. ^ 1,3-Dipolar Cycloaddition Chemistry, published by Wiley and updated in 2002
  12. ^ Morten Meldal & Christian Wenzel Tornøe (2008). "Cu-Catalyzed Azide-Alkyne Cycloaddition". Chemical Reviews. 108 (8): 2952–3015. doi:10.1021/cr0783479. PMID 18698735.
  13. ^ F Himo; T Lovell; R Hilgraf; VV Rostovtsev; L Noodleman; KB Sharpless; VV Fokin (2005). "Copper(I)-Catalyzed Synthesis of Azoles, DFT Study Predicts Unprecedented Reactivity and Intermediates". Journal of the American Chemical Society. 127 (1): 210–216. doi:10.1021/ja0471525. PMID 15631470. S2CID 20486589.
  14. ^ Rodionov, Valentin O.; Fokin, Valery V.; Finn, M. G. (2005-04-08). "Mechanism of the Ligand-Free CuI-Catalyzed Azide–Alkyne Cycloaddition Reaction". Angewandte Chemie International Edition. 44 (15): 2210–2215. doi:10.1002/anie.200461496. ISSN 1521-3773. PMID 15693051.
  15. ^ Worrell, B. T.; Malik, J. A.; Fokin, V. V. (2013-04-26). "Direct Evidence of a Dinuclear Copper Intermediate in Cu(I)-Catalyzed Azide-Alkyne Cycloadditions". Science. 340 (6131): 457–460. Bibcode:2013Sci...340..457W. doi:10.1126/science.1229506. ISSN 0036-8075. PMC 3651910. PMID 23558174.
  16. ^ Iacobucci, Claudio; Reale, Samantha; Gal, Jean-François; De Angelis, Francesco (2015-03-02). "Dinuclear Copper Intermediates in Copper(I)-Catalyzed Azide–Alkyne Cycloaddition Directly Observed by Electrospray Ionization Mass Spectrometry". Angewandte Chemie International Edition. 54 (10): 3065–3068. doi:10.1002/anie.201410301. ISSN 1521-3773. PMID 25614295.
  17. ^ Jin, Liqun; Tolentino, Daniel R.; Melaimi, Mohand; Bertrand, Guy (2015-06-01). "Isolation of bis(copper) key intermediates in Cu-catalyzed azide-alkyne "click reaction"". Science Advances. 1 (5): e1500304. Bibcode:2015SciA....1E0304J. doi:10.1126/sciadv.1500304. ISSN 2375-2548. PMC 4640605. PMID 26601202.
  18. ^ Özkılıç, Yılmaz; Tüzün, Nurcan Ş. (2016-08-22). "A DFT Study on the Binuclear CuAAC Reaction: Mechanism in Light of New Experiments". Organometallics. 35 (16): 2589–2599. doi:10.1021/acs.organomet.6b00279. ISSN 0276-7333.
  19. ^ Ziegler, Micah S.; Lakshmi, K. V.; Tilley, T. Don (2017-04-19). "Dicopper Cu(I)Cu(I) and Cu(I)Cu(II) Complexes in Copper-Catalyzed Azide–Alkyne Cycloaddition". Journal of the American Chemical Society. 139 (15): 5378–5386. doi:10.1021/jacs.6b13261. ISSN 0002-7863. PMID 28394586.
  20. ^ V. D. Bock; H. Hiemstra; J. H. van Maarseveen (2006). "CuI-Catalyzed Alkyne–Azide "Click" Cycloadditions from a Mechanistic and Synthetic Perspective". European Journal of Organic Chemistry. 2006: 51–68. doi:10.1002/ejoc.200500483.
  21. ^ Valentin O. Rodionov; Stanislav I. Presolski; David Dı´az Dı´az; Valery V. Fokin & M. G. Finn (2007). "Ligand-Accelerated Cu-Catalyzed Azide-Alkyne Cycloaddition: A Mechanistic Report". J. Am. Chem. Soc. 129 (42): 12705–12712. doi:10.1021/ja072679d. PMID 17914817.
  22. ^ Li Zhang; Xinguo Chen; Peng Xue; Herman H. Y. Sun; Ian D. Williams; K. Barry Sharpless; Valery V. Fokin; Guochen Jia (2005). "Ruthenium-Catalyzed Cycloaddition of Alkynes and Organic Azides". J. Am. Chem. Soc. 127 (46): 15998–15999. doi:10.1021/ja054114s. PMID 16287266.
  23. ^ Brant C. Boren; Sridhar Narayan; Lars K. Rasmussen; Li Zhang; Haitao Zhao; Zhenyang Lin; Guochen Jia; Valery V. Fokin (2008). "Ruthenium-Catalyzed Azide−Alkyne Cycloaddition: Scope and Mechanism". J. Am. Chem. Soc. 130 (28): 8923–8930. doi:10.1021/ja0749993. PMID 18570425.
  24. ^ McNulty, J.; Keskar, K; Vemula, R. (2011). "The First Well-Defined Silver(I)-Complex-Catalyzed Cycloaddition of Azides onto Terminal Alkynes at Room Temperature". Chemistry: A European Journal. 17 (52): 14727–14730. doi:10.1002/chem.201103244. PMID 22125272.
  25. ^ McNulty, J.; Keskar, K. (2012). "Discovery of a Robust and Efficient Homogeneous Silver(I) Catalyst for the Cycloaddition of Azides onto Terminal Alkynes". Eur. J. Org. Chem. 2012 (28): 5462–5470. doi:10.1002/ejoc.201200930.
  26. ^ Proietti Silvestri I, Andemarian F, Khairallah GN, Yap S, Quach T, Tsegay S, Williams CM, O'Hair RA, Donnelly PS, Williams SJ (2011). "Copper(i)-catalyzed cycloaddition of silver acetylides and azides: Incorporation of volatile acetylenes into the triazole core". Organic and Biomolecular Chemistry. 9 (17): 6082–6088. doi:10.1039/c1ob05360d. PMID 21748192.
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