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nextflow-infra Public
Forked from Sage-Bionetworks-Workflows/nextflow-infraAWS CloudFormation templates for deploying Nextflow infrastructure
Python Apache License 2.0 UpdatedJan 28, 2025 -
aws-htan-infra Public
Forked from Sage-Bionetworks/aws-htan-infraAWS CloudFormation templates for deploying HTAN infrastructure
Apache License 2.0 UpdatedJan 3, 2025 -
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synapsePythonClient Public
Forked from Sage-Bionetworks/synapsePythonClientProgrammatic interface to Synapse services for Python
Python Apache License 2.0 UpdatedNov 6, 2024 -
data_curator_config Public
Forked from Sage-Bionetworks/data_curator_configProject configurations for the Data Curator App
UpdatedOct 22, 2024 -
scicomp-provisioner Public
Forked from Sage-Bionetworks/scicomp-provisionerAn service to auto provision resources
Jinja Apache License 2.0 UpdatedOct 18, 2024 -
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py-dcqc Public
Forked from Sage-Bionetworks-Workflows/py-dcqcPython package for performing quality control (QC) for data coordination (DC)
Python Apache License 2.0 UpdatedJul 9, 2024 -
synapse-web-monorepo Public
Forked from Sage-Bionetworks/synapse-web-monorepoMonorepo for Synapse Web projects
TypeScript UpdatedApr 9, 2024 -
nf-synindex Public
Forked from Sage-Bionetworks-Workflows/nf-synindexNextflow pipeline for indexing S3 objects in Synapse
Nextflow Apache License 2.0 UpdatedMar 6, 2024 -
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htan-artist Public
A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.
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miniature Public
Use dimensionality reduction to create thumnails for high-dimensional imaging
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scimap Public
Forked from labsyspharm/scimapSpatial Single-Cell Analysis Toolkit
Python UpdatedJun 20, 2023 -
test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedMar 28, 2023 -
modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedMar 14, 2023 -
HistoQC Public
Forked from choosehappy/HistoQCHistoQC is an open-source quality control tool for digital pathology slides
Python BSD 3-Clause Clear License UpdatedFeb 23, 2023 -
data-models Public
Forked from ncihtan/data-modelsSchema.org Data Models for HTAN
MIT License UpdatedJan 27, 2023 -
bioformats2raw Public
Forked from glencoesoftware/bioformats2rawBio-Formats image file format to raw format converter
Java GNU General Public License v2.0 UpdatedJan 10, 2023 -
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mcmicro Public
Forked from labsyspharm/mcmicroMultiple-choice microscopy pipeline
Nextflow MIT License UpdatedSep 15, 2022 -
htan-portal Public
Forked from ncihtan/htan-portalThe HTAN Data Portal
TypeScript UpdatedJul 8, 2022 -
synapsegenie Public
Forked from Sage-Bionetworks/synapsegenieThis package can deploy a AACR GENIE like project on Synapse and perform validation and processing of files.
Python MIT License UpdatedJun 23, 2022 -
ome-tiff-pyramid-tools Public
Forked from labsyspharm/ome-tiff-pyramid-toolsPython tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
Python MIT License UpdatedJun 1, 2022 -
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seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R Other UpdatedApr 25, 2022
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