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BarCounter-release Public
Forked from AllenInstitute/BarCounter-releaseBarCounter DNA barcode quantification
C Other UpdatedDec 16, 2021 -
aifi-swanson-teaseq Public
Forked from AllenInstitute/aifi-swanson-teaseqCode related to Swanson, et. al. for TEA-seq, ICICLE-seq, and scATAC-seq data processing, analysis, and visualization
R Other UpdatedSep 20, 2021 -
python-machine-learning-book-3rd-edition Public
Forked from rasbt/python-machine-learning-book-3rd-editionThe "Python Machine Learning (3rd edition)" book code repository
Jupyter Notebook MIT License UpdatedAug 27, 2021 -
demuxlet Public
Forked from statgen/demuxletGenetic multiplexing of barcoded single cell RNA-seq
C++ Apache License 2.0 UpdatedFeb 11, 2021 -
asap_reproducibility Public
Forked from caleblareau/asap_reproducibilityReproducing all analyses and figures for the ASAP-seq paper
Jupyter Notebook UpdatedJan 6, 2021 -
asap_to_kite Public
Forked from caleblareau/asap_to_kiteCL python script to reformat CITEATAC fastqs for kite (kallisto | bustools) processing
Python UpdatedJul 22, 2020 -
seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
R GNU General Public License v3.0 UpdatedNov 13, 2019 -
shiny.rstudio.com-tutorial Public
Forked from rstudio-education/shiny.rstudio.com-tutorialSlides and exercises for the video tutorial at https://shiny.rstudio.com/tutorial/
R UpdatedOct 25, 2019 -
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
C GNU General Public License v3.0 UpdatedJul 28, 2019 -
kite Public
Forked from pachterlab/kitekallisto index tag extractor
Python BSD 2-Clause "Simplified" License UpdatedJul 6, 2019 -
PiCnIc-COADREAD Public
Forked from BIMIB-DISCo/PiCnIc-COADREADPiCnIc implementation for COADREAD
R UpdatedMay 5, 2019 -
treeomics Public
Forked from reiterlab/treeomicsDecrypting somatic mutation patterns to reveal the evolution of cancer
Python GNU General Public License v3.0 UpdatedDec 4, 2018 -
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pyclone Public
Forked from Roth-Lab/pycloneProbabilistic model for inferring clonal population structure from deep NGS sequencing.
Python Other UpdatedJan 6, 2018 -
docker-stacks Public
Forked from pseudogene/docker-stacksStacks is a software pipeline for building loci from short-read sequences - Now in a Docker
Shell GNU General Public License v3.0 UpdatedNov 28, 2017 -
BIC-variants_pipeline Public
Forked from soccin/BIC-variants_pipelineBIC@MSKCC Variants Pipeline
C++ UpdatedJul 26, 2017 -
SCHISM Public
Forked from KarchinLab/SCHISMSubclonal Hierarchy Inference from Somatic Mutations
Python Other UpdatedJun 21, 2017 -
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pa3bc Public
Forked from CSB-IG/pa3bcPathway Analyses of Apoptosis and Autophagy on Breast Cancer
R GNU General Public License v3.0 UpdatedDec 14, 2015
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