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Open source code for AlphaFold 2.

Python 13,125 2,319 Updated Jan 29, 2025

This project is a collection of tools for bioinformatic processing of ancient DNA data at the Harvard Medical School Reich Lab.

Java 18 2 Updated Jul 11, 2024
Python 1 Updated Apr 11, 2016
Python 3 Updated Oct 28, 2015

SMC++ infers population history from whole-genome sequence data.

C++ 159 35 Updated Jan 20, 2024

Useful bioinformatic scripts

Shell 53 53 Updated Nov 26, 2024

Tools test whether admixture occurred and more

C 185 65 Updated Sep 6, 2024

Program for analysing NGS data.

C++ 233 52 Updated Nov 14, 2024

Wrapper functions that make plotting in R a lot easier for beginners.

R 79 18 Updated Jul 10, 2018

Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

Python 142 24 Updated Aug 8, 2024

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

C++ 213 66 Updated Feb 17, 2022