Setting Release-Version v2.17.0

Setting Release-Version v2.16.2

Setting Release-Version v2.16.1

version 2.16.0

Merge pull request arq5x#16 from agordon/feature/auto_git_version

Makefile: Auto-generate version string from Git version

Removed most version.h includes from sub-tools.

specifically request unpadded and 1-based ends from GetEndCoordinate()

Updated version and RELEASE_HISTORY for 2.12.0

Version = 2.11.1

Removed careless debugging message from annotateBed.