Deep learning-based pseudo mass spectrometry imaging processing for precision medicine.
More information can be found here.
Please install R packages that used in the analysis.
install.packages("remotes")
install.packages("tidyverse")
remotes::install_gitlab("jaspershen/masstools")
install.packages("tidyr")
install.packages("plyr")
install.packages("VennDiagram")
install.packages("randomForest")
install.packages("Boruta")
There are three parts of codes in this repo.
pseudoMS-image-converter
This is written by R which is used to convert LC-MS raw data to pseudo-MS image.
pseudoMS-image-predictor
This is written by Python which is used to construct deep learning prediction model.
figures_in_manuscript
All the analysis code in our manuscript.