Repo of the 2024 Harvard Rare Disease Hackathon projects.

A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support

cython wrapper for khash

cython wrapper for khash

Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".

A native macOS KeePass client

Use C++ libraries from Rust

Quantitative Financial Modelling Framework

Fast truncated singular value decompositions

R toolkit for single cell genomics

Scripts to build an **unofficial** Rtools-esq installer for the macOS R toolchain

R configurations for Docker

Probabilistic Torch is library for deep generative models that extends PyTorch

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

R driver for MongoDB

ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.

The Meson Build System

An R package for reading ABI fsa capillary files, and conducting various fragment analyses. At this point AFLPs, but microsatellites (SSRs) are also planned.

C++ htslib/bwa-mem/fermi interface for interrogating sequence data

Various code metrics for Python code

Inference of couplings in proteins and RNAs from sequence variation

⚠️ This project was archived on September 25th, 2020 and is no longer maintained

An r package for generating beautiful and customizable heatmaps

Python libraries and tools for running applications on diverse Grids and clusters