Lists (3)
Stars
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
an interactive explorer for flow cytometry data
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
Single-cell exploratory data analysis for RNA-Seq
This repository was used to store the code, which was used in "Single-cell Profiling Reveals Distinct Adaptive Immune Hallmarks in MDA5+ Dermatomyositis with Therapeutic Implications"
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
python package for working with immune receptor sequence data
📚 Tools and databases for analyzing HLA and VDJ genes.
Single-cell Transcriptome and Regulome Analysis Pipeline
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
High dimensional weighted gene co-expression network analysis
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
This package contains deep learning models and related scripts for RoseTTAFold
Protein structure diffusion model for unconditional protein generation and motif scaffolding
A generative model for programmable protein design
Diffusion-based all-atom protein generative model.
Generative method to design novel proteins using a diffusion model