Variant Calling Pipeline Using GATK4 and Nextflow
This repo contains a Nextflow script for variant detection using GATK4. Full details including a description of the analysis and how to use the script: https://gencore.bio.nyu.edu/variant-calling-pipeline-gatk4/
Overview of the workflow:
