forked from satijalab/seurat
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
9242f58
commit 2cab995
Showing
3 changed files
with
6 additions
and
94 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -3,8 +3,7 @@ | |
| [](https://cran.r-project.org/package=Seurat) | ||
| [](https://cran.r-project.org/package=Seurat) | ||
|
|
||
| # Seurat v4.0 Beta | ||
|
|
||
| # Seurat v4.0 | ||
|
|
||
| Seurat is an R toolkit for single cell genomics, developed and maintained by the Satija Lab at NYGC. | ||
|
|
||
|
|
@@ -18,93 +17,6 @@ Seurat is also hosted on GitHub, you can view and clone the repository at | |
|
|
||
| Seurat has been successfully installed on Mac OS X, Linux, and Windows, using the devtools package to install directly from GitHub | ||
|
|
||
| Improvements and new features will be added on a regular basis, please contact [email protected] with any questions or if you would like to contribute | ||
|
|
||
| Version History | ||
|
|
||
| July 15, 2020 | ||
|
|
||
| * Version 3.2 | ||
| * Changes: | ||
| * Support for analysis and visualization of spatially resolved datasets | ||
|
|
||
| August 20, 2019 | ||
|
|
||
| * Version 3.1 | ||
| * Changes: | ||
| * Support for SCTransform integration workflows | ||
| * Integration speed ups: reference-based integration + reciprocal PCA | ||
|
|
||
| April 12, 2019 | ||
|
|
||
| * Version 3.0 | ||
| * Changes: | ||
| * Preprint published describing new methods for identifying anchors across single-cell datasets | ||
| * Restructured Seurat object with native support for multimodal data | ||
| * Parallelization support via future | ||
|
|
||
| July 20, 2018 | ||
|
|
||
| * Version 2.4 | ||
| * Changes: | ||
| * Java dependency removed and functionality rewritten in Rcpp | ||
|
|
||
| March 22, 2018 | ||
|
|
||
| * Version 2.3 | ||
| * Changes: | ||
| * New utility functions | ||
| * Speed and efficiency improvments | ||
|
|
||
| January 10, 2018 | ||
|
|
||
| * Version 2.2 | ||
| * Changes: | ||
| * Support for multiple-dataset alignment with RunMultiCCA and AlignSubspace | ||
| * New methods for evaluating alignment performance | ||
|
|
||
| October 12, 2017 | ||
|
|
||
| * Version 2.1 | ||
| * Changes: | ||
| * Support for using MAST and DESeq2 packages for differential expression testing in FindMarkers | ||
| * Support for multi-modal single-cell data via \@assay slot | ||
|
|
||
| July 26, 2017 | ||
|
|
||
| * Version 2.0 | ||
| * Changes: | ||
| * Preprint released for integrated analysis of scRNA-seq across conditions, technologies and species | ||
| * Significant restructuring of code to support clarity and dataset exploration | ||
| * Methods for scoring gene expression and cell-cycle phase | ||
|
|
||
| October 4, 2016 | ||
|
|
||
| * Version 1.4 released | ||
| * Changes: | ||
| * Improved tools for cluster evaluation/visualizations | ||
| * Methods for combining and adding to datasets | ||
|
|
||
| August 22, 2016: | ||
|
|
||
| * Version 1.3 released | ||
| * Changes : | ||
| * Improved clustering approach - see FAQ for details | ||
| * All functions support sparse matrices | ||
| * Methods for removing unwanted sources of variation | ||
| * Consistent function names | ||
| * Updated visualizations | ||
|
|
||
| May 21, 2015: | ||
|
|
||
| * Drop-Seq manuscript published. Version 1.2 released | ||
| * Changes : | ||
| * Added support for spectral t-SNE and density clustering | ||
| * New visualizations - including pcHeatmap, dot.plot, and feature.plot | ||
| * Expanded package documentation, reduced import package burden | ||
| * Seurat code is now hosted on GitHub, enables easy install through devtools | ||
| * Small bug fixes | ||
|
|
||
| April 13, 2015: | ||
| Improvements and new features will be added on a regular basis, please post on the [github page](https://github.com/satijalab/seurat) with any questions or if you would like to contribute | ||
|
|
||
| * Spatial mapping manuscript published. Version 1.1 released (initial release) | ||
| For a version history/changelog, please see the [NEWS file](https://github.com/satijalab/seurat/blob/master/NEWS.md). | ||