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trigger rebuild
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andrewwbutler committed Jan 26, 2021
1 parent 6eb14c3 commit 80d3009
Showing 1 changed file with 1 addition and 2 deletions.
3 changes: 1 addition & 2 deletions vignettes/integration_introduction.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -151,8 +151,7 @@ Idents(immune.combined) <- factor(
levels = c("Mono/Mk Doublets", "pDC", "Eryth","Mk", "DC", "CD14 Mono", "CD16 Mono", "B Activated", "B", "CD8 T", "NK", "T activated", "CD4 Naive T", "CD4 Memory T"))
markers.to.plot <- c("CD3D","CREM","HSPH1","SELL","GIMAP5","CACYBP","GNLY","NKG7","CCL5","CD8A","MS4A1","CD79A","MIR155HG","NME1","FCGR3A","VMO1",
"CCL2","S100A9","HLA-DQA1","GPR183","PPBP","GNG11","HBA2","HBB","TSPAN13","IL3RA","IGJ")
DotPlot(immune.combined, features = markers.to.plot, cols = c('blue', 'red'),
dot.scale = 8, split.by = "stim") + RotatedAxis()
DotPlot(immune.combined, features = markers.to.plot, cols = c('blue', 'red'), dot.scale = 8, split.by = "stim") + RotatedAxis()
```

```{r save.img, include = FALSE}
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