TABI-PB (treecode-accelerated boundary integral) solves the linear Poisson-Boltzmann equation. This TABI-PB repo serves as a submodule to APBS, and also works as a standalone distribution.

Geometric loss functions between point clouds, images and volumes

PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.

Software for biomolecular electrostatics and solvation calculations

C++ implementation of the Coherent Point Drift point set registration algorithm.

Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"

The Rosetta Bio-macromolecule modeling package.

pKa estimates for proteins using an ensemble approach

Litl is an easy to build 40% keyboard using only through hole components.

Pure Numpy Implementation of the Coherent Point Drift Algorithm

C++ library for fast Gauss transforms.

Unofficial python wrapper to the nanoflann k-d tree

Pipeline for putting surface meshes into correspondence

Choc spaced Corne inpired keyboard, a choc spaced split keyboard with 3x5 column staggered keys and 3 thumb keys.

for building keyboard libraries

Analyze and compare various alternative keyboard layouts

Open-source keyboard firmware for Atmel AVR and Arm USB families

Miryoku is an ergonomic, minimal, orthogonal, and universal keyboard layout. Miryoku QMK is the Miryoku implementation for QMK.

Miryoku is an ergonomic, minimal, orthogonal, and universal keyboard layout. Miryoku KMonad is the Miryoku implementation for KMonad.

Various choc spaced corne boards including a pg1232 version and a no diode bluetooth only version for nice!nanos or similar.

Code for the ProteinMPNN paper

A beautiful, simple, clean, and responsive Jekyll theme for academics

Trainable PyTorch reproduction of AlphaFold 2

Sample code for Fast Sinkhorn Filters - from CVPR 2021

Single-Header Reference Implementation of Rigid Coherent Point Drift in C++ / Eigen3 in < 80 LOC

OutRun is an open-source, privacy oriented, outdoor fitness tracker.

Pairwise Sequence Alignment Library