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evaluation.py
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# ----------------------------------------------------------------------------
# - TanksAndTemples Website Toolbox -
# - http://www.tanksandtemples.org -
# ----------------------------------------------------------------------------
# The MIT License (MIT)
#
# Copyright (c) 2017
# Arno Knapitsch <[email protected] >
# Jaesik Park <[email protected]>
# Qian-Yi Zhou <[email protected]>
# Vladlen Koltun <[email protected]>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
# THE SOFTWARE.
# ----------------------------------------------------------------------------
#
# This python script is for downloading dataset from www.tanksandtemples.org
# The dataset has a different license, please refer to
# https://tanksandtemples.org/license/
import json
import copy
import os
import numpy as np
import open3d as o3d
import matplotlib.pyplot as plt
def read_alignment_transformation(filename):
with open(filename) as data_file:
data = json.load(data_file)
return np.asarray(data["transformation"]).reshape((4, 4)).transpose()
def write_color_distances(path, pcd, distances, max_distance):
o3d.utility.set_verbosity_level(o3d.utility.VerbosityLevel.Debug)
# cmap = plt.get_cmap("afmhot")
cmap = plt.get_cmap("hot_r")
distances = np.array(distances)
colors = cmap(np.minimum(distances, max_distance) / max_distance)[:, :3]
pcd.colors = o3d.utility.Vector3dVector(colors)
o3d.io.write_point_cloud(path, pcd)
def EvaluateHisto(
source,
target,
trans,
crop_volume,
voxel_size,
threshold,
filename_mvs,
plot_stretch,
scene_name,
view_crop,
verbose=True,
):
print("[EvaluateHisto]")
o3d.utility.set_verbosity_level(o3d.utility.VerbosityLevel.Debug)
s = copy.deepcopy(source)
s.transform(trans)
if crop_volume is not None:
s = crop_volume.crop_point_cloud(s)
if view_crop:
o3d.visualization.draw_geometries([s, ])
else:
print("No bounding box provided to crop estimated point cloud, leaving it as the loaded version!!")
s = s.voxel_down_sample(voxel_size)
s.estimate_normals(search_param=o3d.geometry.KDTreeSearchParamKNN(knn=20))
print(filename_mvs + "/" + scene_name + ".precision.ply")
t = copy.deepcopy(target)
if crop_volume is not None:
t = crop_volume.crop_point_cloud(t)
else:
print("No bounding box provided to crop groundtruth point cloud, leaving it as the loaded version!!")
t = t.voxel_down_sample(voxel_size)
t.estimate_normals(search_param=o3d.geometry.KDTreeSearchParamKNN(knn=20))
print("[compute_point_cloud_to_point_cloud_distance]")
distance1 = s.compute_point_cloud_distance(t)
print("[compute_point_cloud_to_point_cloud_distance]")
distance2 = t.compute_point_cloud_distance(s)
# write the distances to bin files
# np.array(distance1).astype("float64").tofile(
# filename_mvs + "/" + scene_name + ".precision.bin"
# )
# np.array(distance2).astype("float64").tofile(
# filename_mvs + "/" + scene_name + ".recall.bin"
# )
# Colorize the poincloud files prith the precision and recall values
# o3d.io.write_point_cloud(
# filename_mvs + "/" + scene_name + ".precision.ply", s
# )
# o3d.io.write_point_cloud(
# filename_mvs + "/" + scene_name + ".precision.ncb.ply", s
# )
# o3d.io.write_point_cloud(filename_mvs + "/" + scene_name + ".recall.ply", t)
source_n_fn = filename_mvs + "/" + scene_name + ".precision.ply"
target_n_fn = filename_mvs + "/" + scene_name + ".recall.ply"
print("[ViewDistances] Add color coding to visualize error")
# eval_str_viewDT = (
# OPEN3D_EXPERIMENTAL_BIN_PATH
# + "ViewDistances "
# + source_n_fn
# + " --max_distance "
# + str(threshold * 3)
# + " --write_color_back --without_gui"
# )
# os.system(eval_str_viewDT)
write_color_distances(source_n_fn, s, distance1, 3 * threshold)
print("[ViewDistances] Add color coding to visualize error")
# eval_str_viewDT = (
# OPEN3D_EXPERIMENTAL_BIN_PATH
# + "ViewDistances "
# + target_n_fn
# + " --max_distance "
# + str(threshold * 3)
# + " --write_color_back --without_gui"
# )
# os.system(eval_str_viewDT)
write_color_distances(target_n_fn, t, distance2, 3 * threshold)
# get histogram and f-score
[
precision,
recall,
fscore,
edges_source,
cum_source,
edges_target,
cum_target,
] = get_f1_score_histo2(threshold, filename_mvs, plot_stretch, distance1,
distance2)
np.savetxt(filename_mvs + "/" + scene_name + ".recall.txt", cum_target)
np.savetxt(filename_mvs + "/" + scene_name + ".precision.txt", cum_source)
np.savetxt(
filename_mvs + "/" + scene_name + ".prf_tau_plotstr.txt",
np.array([precision, recall, fscore, threshold, plot_stretch]),
)
return [
precision,
recall,
fscore,
edges_source,
cum_source,
edges_target,
cum_target,
]
def get_f1_score_histo2(threshold,
filename_mvs,
plot_stretch,
distance1,
distance2,
verbose=True):
print("[get_f1_score_histo2]")
dist_threshold = threshold
if len(distance1) and len(distance2):
recall = float(sum(d < threshold for d in distance2)) / float(
len(distance2))
precision = float(sum(d < threshold for d in distance1)) / float(
len(distance1))
fscore = 2 * recall * precision / (recall + precision)
num = len(distance1)
bins = np.arange(0, dist_threshold * plot_stretch, dist_threshold / 100)
hist, edges_source = np.histogram(distance1, bins)
cum_source = np.cumsum(hist).astype(float) / num
num = len(distance2)
bins = np.arange(0, dist_threshold * plot_stretch, dist_threshold / 100)
hist, edges_target = np.histogram(distance2, bins)
cum_target = np.cumsum(hist).astype(float) / num
else:
precision = 0
recall = 0
fscore = 0
edges_source = np.array([0])
cum_source = np.array([0])
edges_target = np.array([0])
cum_target = np.array([0])
return [
precision,
recall,
fscore,
edges_source,
cum_source,
edges_target,
cum_target,
]