update docs

NAMESPACE

@@ -101,6 +101,7 @@ export("read.chromInfo")
 export("read.cytoband")
 export("reverse.circlize")
 export("set.current.cell")
+export("set_track_gap")
 export("show.index")
 export("smartAlign")
 export("uh")

man/circos.link.Rd

@@ -30,7 +30,8 @@ circos.link(
     arr.type = "triangle",
     arr.lty = lty,
     arr.lwd = lwd,
-    arr.col = col)
+    arr.col = col,
+    reduce_to_mid_line = FALSE)
 }
 \arguments{
 
@@ -57,6 +58,7 @@ circos.link(
   \item{arr.col}{Color of the arrows, pass to \code{\link[shape]{Arrowhead}}.}
   \item{arr.lwd}{Line width of arrows, pass to \code{\link[shape]{Arrowhead}}.}
   \item{arr.lty}{Line type of arrows, pass to \code{\link[shape]{Arrowhead}}.}
+  \item{reduce_to_mid_line}{Only use the middle points of \code{point1} and \code{point2} to draw the link.}
 
 }
 \details{

man/set_track_gap.Rd

@@ -0,0 +1,23 @@
+\name{set_track_gap}
+\alias{set_track_gap}
+\title{
+Set gaps between tracks
+}
+\description{
+Set gaps between tracks
+}
+\usage{
+set_track_gap(gap = 0.02)
+}
+\arguments{
+
+  \item{gap}{Gap between two tracks}
+
+}
+\examples{
+circos.initialize(fa = letters[1:10], xlim = c(0, 1))
+circos.track(ylim = c(0, 1))
+set_track_gap(mm_h(2))
+circos.track(ylim = c(0, 1))
+circos.clear()
+}