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14 followers · 10 following

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex2Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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Organizations

@BMCV

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kostrykin/README.md

Stack Exchange reputation Stack Exchange reputation

https://orcid.org/0000-0003-1323-3762

https://mstdn.science/@kostrykin

https://twitter.com/l_kostrykin

https://www.instagram.com/l.kostrykin

https://hub.docker.com/u/kostrykin

Recent contributions to #usegalaxy:

Generated using https://github.com/kostrykin/galaxy-community-activities

Research and tools:

Image segmentation: SuperDSM, segmetrics

Real-time 3D visualization: RWTHmediTEC/Carna, Carna, CarnaPy

Auxiliary toolboxes: repype

Actions: report-test-coverage-action

Teaching repositories:

Codespaces: python-learning-codespace, mobi-devcontainer-python

Actions: build-latex-document-action, create-future-branch-action, label-semester-issue-action

Personal side-projects: https://github.com/kosmotive

Pinned Loading

  1. BMCV/SuperDSM BMCV/SuperDSM Public

    SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.

    Python 3

  2. BMCV/segmetrics BMCV/segmetrics Public

    Image segmentation and object detection performance measures

    Python 2

  3. BMCV/galaxy-image-analysis BMCV/galaxy-image-analysis Public

    Galaxy tools for image analysis

    Python 15 17

  4. flatironinstitute/sparse_dot flatironinstitute/sparse_dot Public

    Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication

    Python 75 11

  5. Carna Carna Public

    Forked from RWTHmediTEC/Carna

    Real-time 3D visualization of biomedical data and beyond

    C 1

  6. CarnaPy CarnaPy Public

    Real-time 3D visualization for biomedical data and beyond in Python

    C++ 1