Skip to content

Commit

Permalink
minor typos
Browse files Browse the repository at this point in the history
  • Loading branch information
yeredh committed Apr 19, 2015
1 parent fd9604a commit 18f1035
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions course4/normalization.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -226,7 +226,7 @@ mypar(1,1)
maplot(log2(y1),log2(y2),ylim=c(-1,1),curve.add=FALSE)
```

For this type of data, the variance depends on the mean. We seek a transfromation that stabilizies the variance of the estimates of $\theta$ after we subctract the additive background estimate and divide by the estimate of the gain.
For this type of data, the variance depends on the mean. We seek a transformation that stabilizies the variance of the estimates of $\theta$ after we subctract the additive background estimate and divide by the estimate of the gain.

```{r}
ny1=(y1-b1)/A1
Expand All @@ -247,7 +247,7 @@ $$
\text{arsinh}(y) = \log\left(y + \sqrt{y^2+1} \right)
$$

The `vsn` library implements this apprach. It estimates $\beta$ and $A$ by assuming that most genes don't change, i.e. $\theta$ does not depend on $i$.
The `vsn` library implements this approach. It estimates $\beta$ and $A$ by assuming that most genes don't change, i.e. $\theta$ does not depend on $i$.
```{r}
library(vsn)
Expand Down

0 comments on commit 18f1035

Please sign in to comment.