The ENIGMA TOOLBOX is an open source repository for (i) accessing 100+ ENIGMA-derived statistical maps, (ii) visualizing and manipulating cortical and subcortical surface data, and (iii) contextualizing neuroimaging findings at the microscale (using postmortem gene expression and cytoarchitecture) and macroscale (using structural and functional connectome data).

Check out our expandable online documentation at http://enigma-toolbox.readthedocs.io to learn how to:

To install the Toolbox in Python, run the following in your terminal:

git clone https://github.com/MICA-MNI/ENIGMA.git
cd ENIGMA
python setup.py install

To install the Toolbox in Matlab, run the following in your terminal:

git clone https://github.com/MICA-MNI/ENIGMA.git

And then simply run the following in Matlab:

addpath(genpath('/path/to/ENIGMA/matlab/'))

Please acknowledge this work using the citation below:

Larivière, S., Paquola, C., Park, By. Royer, J., Wang, Y., Benkarim, O., Vos de Wael, R., Valk, S., Thomopoulos, S.I., Kirschner, M., Lewis, L.B., Evans, A.C., Sisodiya, S.M., McDonald, C.R., Thompson, P.T, Bernhardt, B.C.. The ENIGMA Toolbox: multiscale neural contextualization of multisite neuroimaging datasets. Nat Methods 18, 698–700 (2021). https://doi.org/10.1038/s41592-021-01186-4