Stars
Cross-expression analysis of spatial transcriptomic data
This repository will host a (continously updated) list of various deep learning methods used in different stages of spatial transcriptomics analysis.
🎉 A curated collection of useful links, tutorials, and resources for the AnyType app – a knowledge management and organization tool. Explore guides, templates, and community-contributed content to …
SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers
A program for viewing and analyzing electrophysiological data
The known BioVoxxel Toolbox functions now improved for 2D and 3D images
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Interactive surface analysis in napari for bio-mechanical stress measurement
ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari
Basic digital image design, processing, analysis, management, and presentation - datasets and code
WebGL based mesh viewer with solid slicing and point cloud support. User documentation https://meshview-for-brain-atlases.readthedocs.io
Image Deconvolution via Noise-Tolerant Self-Supervised Inversion
A napari plugin to process and analyse images with chatGPT!
Native Qt interface for Meta's Segment Anything 2 in Images and Videos
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
Deep learning-driven multi animal tracking and pose estimation add-on for Blender
This repository hosts a proposal for an annotation template for community annotations
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Techn…
This repository hosts material for the BioImage Analysis and Data Processing Workshop 2024, which takes place in VMCF Microscopy Facility, Vinicna 7, Prague, Czechia
A napari plugin for clustering objects according to their properties.
Zuckerman Institute scripts for spinal cord analysis