CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Shiny Interactive Web Apps for Single-Cell Data

Processing scripts for single cell DNA sequencing on the Tapestri platform

MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

一些常见的书籍pdf或者视频

Batch balanced KNN

Compute Pathway Geneset Z-score

Documents used for workshops on single cell analysis

R toolkit for single cell genomics

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

An implementation of the Grammar of Graphics in R