Stars
Blender extension exposing a jupyter kernel within Blender.
A multiscale cellular architecture visualization toolkit.
A minimal Python package for reading OME-Zarr (meta)data
Marching Cubes & Mesh Simplification on multi-label 3D images.
SplineDist: Automated Cell Segmentation with Spline Curves
3D U-Net model for volumetric semantic segmentation written in pytorch
Mastodon – a large-scale tracking and track-editing framework for large, multi-view images.
For scientific volumetric data visualization in Blender.
A plugin for snapshot testing with pytest.
Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
Standalone client for managing official builds of Blender 3D
A tool for visualizing and designing colormaps using colorspacious and matplotlib
Resources for teaching/preparing to teach bioimage analysis
Transfer surface layers between Napari and Blender.
A collection of dockers for line detection and association algorithms
Resources for teaching/preparing to teach bioimage analysis
Generates simulated confocal data from a ground truth signal
Decorative desk lamp in the shape of microtubule protein filament.
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
Convert Blender node groups to a Python add-on
Visual Studio Code extension for Blender development.
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
ilastik-shell, applets, and workflows to string them together.
FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets